Salmo trutta (river trout): 115159200
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Entry
115159200 CDS
T08542
Name
(RefSeq) thrombospondin-4-B-like
KO
K04659
thrombospondin 2/3/4/5
Organism
stru
Salmo trutta (river trout)
Pathway
stru04145
Phagosome
stru04510
Focal adhesion
stru04512
ECM-receptor interaction
stru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115159200
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115159200
09144 Cellular community - eukaryotes
04510 Focal adhesion
115159200
09142 Cell motility
04820 Cytoskeleton in muscle cells
115159200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115159200
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stru04147
]
115159200
00536 Glycosaminoglycan binding proteins [BR:
stru00536
]
115159200
Membrane trafficking [BR:
stru04131
]
Endocytosis
Phagocytosis
Opsonins
115159200
Exosome [BR:
stru04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115159200
Exosomal proteins of colorectal cancer cells
115159200
Exosomal proteins of bladder cancer cells
115159200
Glycosaminoglycan binding proteins [BR:
stru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115159200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
cEGF
EGF
EGF_MSP1_1
DUF7630
KASH_CCD
Motif
Other DBs
NCBI-GeneID:
115159200
NCBI-ProteinID:
XP_029564537
Ensembl:
ENSSTUG00000020235
UniProt:
A0A673ZT44
LinkDB
All DBs
Position
23:complement(7807918..7828955)
Genome browser
AA seq
939 aa
AA seq
DB search
MGLWTMLIVASQLILNLCSDVGAQGSVYDLLNTPDCLPDLLQGGLVEQGVNEAFILTTFK
LQPKTGATVFGLYNPRDNSKYFEFTVLGKLNRAVLRYLRSDRRMSSVTFNNIQLADGQRH
RLLFHLKGMQQGPRAVELHLDCRLVETVRDLPSVFQGLPAGYGVVELKSMQGKAEEELEE
LKLVVGDTFENVASLQNCHQQGDSVQTLGVNTKQLSNQMLELTQVINELKDVLIQQVKET
SFLRNTISECQACGLGGSEVMKPKCAPGVCFRDDMCIETEESVECGPCPDGYTGDGFSCE
DVDECQFNPCFAKVKCVNTAPGFRCDACPLGYTGLAVEGVGVVYAQTNKQVCDDIDECKG
PNNGGCTADSLCHNSAGSYVCGGCKTGYIGGQVNGCKPERSCGNSRTNPCDVNAQCIQER
DGSITCQCGIGWAGNGYLCGKDTDIDGYPDEKLKCKDMVCKKDNCMRVPNSGQEDADEDG
QGDACDNDADGDGILNEQDNCWLKPNVDQRNSDKDNHGDACDNCRTVENPDQRDTDSDRK
GDACDDDMDGDGLKNFLDNCQRVVNRDQLDRDGDGVGDACDSCPDIPNPNQSDIDDDLVG
DSCDTNQDSDGDGHQDTKDNCPNVINSSQLDTDKDGLGDECDDDDDNDSIPDFLPPGPDN
CRLVPNPDQLDENNDGVGDVCESDFDQDKVIDRIDNCPENAEVTLTDFRAYQTVVLDPEG
DAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIFGY
QDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKSGPGEHLRNSLWHTGDTNDQ
VRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGTELVADSGVTIDTTMRGGRLG
VFCFSQENIIWSNLKYRCNDTIPEDFQAFSTQHGVNDSL
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggggctgtggacgatgctgatcgtggcttcgcagctgatcttaaacctgtgctcagac
gtgggagcccagggctcagtctatgatctcctaaacaccccggactgtctgccagacctg
ctgcagggtggcctggtggagcagggggtgaatgaggcgttcatcctcaccacctttaaa
ctgcagcccaagactggcgccactgtgttcggcctgtacaacccccgggacaacagcaag
tactttgagttcaccgtgctggggaaactcaacagagctgtgctgcgttacctgaggagt
gatcggaggatgagctctgtgaccttcaacaacatccaactggcggacggtcagcgccac
cgcctcctcttccacctgaaggggatgcagcagggacccagggcggtggagctacacctg
gactgcagactggtggagacggtcagggacctcccctccgtgtttcagggcctgcctgca
ggctacggcgtggtggagctgaagagcatgcagggcaaagcagaggaggagctggaggaa
ttgaaactggtggtgggagacacgttcgagaacgtagcctctctacaaaactgccaccaa
caaggagactcagtgcagactctgggggtcaacacaaagcagctctccaatcaaatgctt
gagctcacccaggtgataaatgagctgaaagatgtccttattcagcaggtcaaagagaca
tcttttctcagaaacaccatctctgagtgccaggcttgtggactgggtggaagcgaagtc
atgaagccaaagtgtgcccctggtgtttgtttccgtgacgacatgtgtattgagacggag
gagagtgttgagtgtggaccctgtcctgatggatacacaggggatggcttcagctgtgaa
gatgtggatgagtgtcagtttaacccttgcttcgccaaggtaaagtgtgtgaacacagct
ccagggtttcgctgtgacgcatgtcctctgggctacactggtctggctgtggagggggtg
ggagtggtctacgcacagacaaacaaacaggtctgtgacgacattgacgagtgcaaagga
cccaacaacggagggtgcactgctgactctctctgtcacaactctgcgggttcatacgtc
tgtgggggctgtaaaacaggctacatagggggccaggtgaatggctgtaagccagagagg
agctgtggtaacagtcggaccaacccctgtgatgtcaacgcccagtgtatccaagaaaga
gacggctccatcacctgtcagtgtgggattggctgggctggtaatggctacctatgtggg
aaggacacagacattgatggataccctgatgagaaactcaagtgcaaggatatggtctgt
aaaaaggataactgcatgcgtgttcccaactctggccaagaagatgctgacgaggacgga
caaggggacgcttgtgacaatgacgctgatggagacggtattctgaatgaacaggataac
tgctggctgaagcctaacgtggaccagaggaacagtgacaaggacaaccatggtgacgcc
tgtgacaactgtcgtacggtggagaaccccgatcagagggacactgacagtgacaggaaa
ggagacgcctgcgatgatgacatggatggagacggcttgaagaacttcctggataactgc
cagcgggtggtgaaccgggaccagttggaccgggatggagacggagtgggagatgcctgt
gacagctgccccgatattcctaatcctaaccagtccgacatcgatgatgacctggttggg
gattcttgtgacacaaaccaagacagtgatggtgacggtcaccaggacaccaaggacaac
tgtcccaacgtgatcaacagctcccagctggacacagacaaagacggcctgggggatgag
tgtgacgatgatgatgacaacgacagcatccctgacttcctgccaccaggacccgacaac
tgcagactggtgcccaaccccgaccagctggatgagaacaatgacggtgttggggatgtg
tgtgagtccgactttgaccaggacaaggtgattgacagaatagacaactgtccagagaac
gctgaggtcactctgacagactttagagcctatcagacggtggtgctggaccccgagggt
gacgcccagattgaccccaactgggttgtcctcaatcagggaatggagattgtgcagacc
atgaacagtgaccccggactggctgtgggttacaccgcgttcagtggggtggactttgag
gggacgttccatgtaaacacagtgactgacgatgactacgcaggcttcatctttggctac
caggactcctcctccttctacgtggtcatgtggaaacagacagagcagacctactggcag
gccacacccttcagagctgtggccgagcctggcatccagctcaaggctgtgaagtctaag
tcgggtccaggtgagcacctgaggaactccctttggcacacaggtgacaccaacgaccag
gtgcgtctgttgtggaaggaccccaggaacgtgggctggaaggacaaggtttcctaccgc
tggtacctgcagcaccggccccaggttggatacatcagggcccgtttctatgagggtaca
gaactggtggctgactctggtgtgaccattgacaccaccatgagaggaggacgactgggc
gtattttgtttctctcaggaaaacatcatctggtccaacctaaagtaccgctgcaatgac
accatccctgaggacttccaggcattcagcacgcagcacggcgtcaacgacagtctctaa
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