Salmo trutta (river trout): 115159902
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Entry
115159902 CDS
T08542
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1 isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115159902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115159902
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115159902
mRNA degradation factors
5'-3' decay
Lsm complex
115159902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
115159902
NCBI-ProteinID:
XP_029565876
Ensembl:
ENSSTUG00000048072
LinkDB
All DBs
Position
23:35303034..35308581
Genome browser
AA seq
175 aa
AA seq
DB search
MRFTSRPKMNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLQQTVERIHV
GKRYGDIPRGIFIVRGENVVLLGEIVSRQQTHTLTLQKSELLREGSSMYGNFMDLEKESD
TSLQQVCIEDILEEQRLQQQSRQEAEKTKHLALKERGLVMPRSDIMDEYGVQHQY
NT seq
528 nt
NT seq
+upstream
nt +downstream
nt
atgagatttacaagccgaccaaaaatgaactacatgccaggaacagccagcctcatcgag
gatatcgataaaaaacatctcgtcctgctcagagatggaagaacgttgatcggctttctc
agaagcattgatcagtttgccaacctggtgctgcagcagacggtggagaggatccacgtg
ggcaagaggtatggagacatccctcgaggaatcttcatcgtcaggggagagaacgttgtc
ctcctgggggagatcgtgagtcggcaacaaacacacacccttacactccagaagtccgaa
ctcttgcgggaaggtagctcaatgtacggtaatttcatggacctggagaaggagagtgac
accagtctgcagcaggtgtgtattgaggacatcctggaggagcagcggctgcagcagcag
agcaggcaggaggcagagaagaccaaacacctggccctgaaggagagaggcctggtcatg
cccagatcagacatcatggacgaatatggagtacagcaccaatactga
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