Salmo trutta (river trout): 115160692
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Entry
115160692 CDS
T08542
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115160692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115160692
Spliceosome [BR:
stru03041
]
Complex A
U1 snRNP components
U1 related factors
115160692
Complex B
115160692
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DUF4936
Motif
Other DBs
NCBI-GeneID:
115160692
NCBI-ProteinID:
XP_029566814
Ensembl:
ENSSTUG00000048236
UniProt:
A0A674EQM5
LinkDB
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Position
24:complement(11594456..11632787)
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AA seq
891 aa
AA seq
DB search
MSSDDNNGQSQAPSFAGVPPSGMPPPFMGPPGMPPHYPPMGMPPMGQRPPNMAPMPPGMM
PPGMMPPMGGPSMGQMPGMRPPMMPGMMMPPRMPAATMQPTGPPGVDTTVTAVPGTVGTT
NGSPQDDQPKNKSVWTEHKSLDEKTYYYNTETKQSSWEKPDDLKSPAEQMLSRCQWKEYK
SDNGKAYYYNSHTKESRWTKPKELEDLEAMIKAEENGMAEVGAPGTVITPNLQLDSAASM
ATMMMEMPAMRPATTVSVEQMSLVPMLVAEVNADSPVNSTEDLAGMEASASNDASKEERP
ELVKKTYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAF
NAYKVQTEKEEKEETRIKYKESKETYQRFLENHEKMTSTTRYKKAEQMFAELDVWSTVPE
RDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNP
TFAEDEELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDEL
HDNGQLHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHD
EKRIIKDILKDKNFLVEVNTSFEDFGTVISSDKRATTLDAGNIKLAFNSLLEKAEARERE
REKEEARKMKRKEATFKSMLKQATPALEPEATWEEVRERFLKESAFEDVTLESERKRIFK
DFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEGEDDYHTKKKKRSQSKSPS
ERSSSGESDRSYKKSKKHKKKGKKRRHKSQSPESEGERKEKGGRERDGKREKDQEKENDK
SRVKSRSESKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatgataataatggccagagccaagcaccttcttttgctggggtcccaccc
tcagggatgccaccgccttttatgggaccaccgggaatgccgcctcattatccaccaatg
ggaatgccacccatgggacagaggcctcccaacatggctcccatgccacctggtatgatg
ccacctggcatgatgccaccaatgggagggccatcgatgggacagatgccaggcatgagg
ccacctatgatgcccgggatgatgatgccacctcgcatgccagctgcgacgatgcagcca
acaggaccgcctggagtggacacaactgtcaccgctgtgcctggaacagttggtaccaca
aatggctcgccacaggatgaccaaccaaagaataagtctgtgtggacagaacataagtct
ctggatgagaagacctactactacaacacagagaccaagcagtcttcctgggaaaagccc
gacgacctgaaatctcctgcagaacaaatgctgtctagatgccaatggaaggagtataaa
tcagacaatgggaaggcgtactactacaactcccacactaaggagtcccggtggaccaaa
cccaaagagcttgaagatctggaagccatgataaaagctgaggagaatgggatggcggag
gtaggtgctcctggcactgtcatcacccccaaccttcagctcgacagcgctgcttcgatg
gcgaccatgatgatggaaatgccggccatgaggccagctacaaccgtctcagtggaacag
atgtccctggtgcccatgcttgtagctgaggtcaacgctgactcgcctgtcaactccaca
gaggacttggccggtatggaggcctcagccagtaatgacgcctcaaaagaggagaggcca
gagctagtgaagaaaacgtacaaatggaacacgaaagaagaggccaagcaggccttcaaa
gagctcctgaaggagaagggcgtttcatccaatgcgtcttgggaacaagctatgaaaatg
atcatcaatgacccacgctacagtgctctgccgaaattaagcgagaaaaagcaggccttc
aatgcttacaaggtgcagacagagaaagaggagaaggaggagactaggatcaagtacaag
gagtccaaggaaacgtatcagcgatttttggaaaaccacgagaaaatgacatctacaacc
agatacaagaaagcagagcagatgtttgcggagctcgatgtgtggagcaccgtcccagag
agggacagactggagatctatgaagacgtcctgttctacctagccaagaaggagaaggag
caagccaagcagctgaggaagaggaactgggaggctctgaagaacatcctggacaacatg
gccaacgtgacgtaccgcaccacctggtccgaggcccagcagtacctgctggacaacccc
accttcgcagaggacgaggagctccagaacatggacaaagaggacgctctgatctgtttc
gaggagcacatccgagcgctggagaaggaggaggaggacgagaagcagaagacactgctg
agggaaaggaggagacagcgcaagaaccgagagtccttccagaaattcctggacgagctc
catgacaacggtcagctccactccatgtctgcctggatggagatgtaccccaccgtcagc
tcagacatccgcttcgccaacatgctgggccagccagtttatggtgtctattctgcaggc
tccactcccctcgatctgttcaagttctacgtggaagacctgaaggctcgctaccacgac
gagaagcggatcattaaggatatcctgaaggacaaaaacttcttggtcgaggtaaacact
agctttgaagactttggcactgtgatcagctcagacaagagagccacaacgctggacgca
ggcaacatcaagctagccttcaacagcttgctggagaaggcagaggctcgggagagggag
cgggagaaggaggaggccaggaagatgaagaggaaagaggccaccttcaagagcatgttg
aagcaggctaccccggccctggaaccagaggccacctgggaagaagtccgagaaagattc
ctcaaagaatctgcattcgaagacgtgactctggagtctgagaggaaaaggatattcaaa
gacttcatgcatgtcttagagcacgagtgccagcatcatcactccaagaccaagaaacac
tcaaagaagtccaagaagcaccacaggaagcgctcccgctctcgatcgggctcagagtct
gaaggtgaagacgattatcacaccaagaagaagaagcgctcacagtccaagtccccgtcc
gagcgctcctccagtggggaatctgatagaagttataagaagtccaagaagcacaagaag
aaggggaagaagaggcgtcacaagtcgcaatctcctgaatccgaaggcgagcggaaagag
aagggaggaagagagagggacggcaagcgggagaaggaccaggagaaagagaacgacaag
tcccgggttaagagtcgctccgaatccaagcagaagtcgcctaaaaggaaatctaccaag
gaggagggtggctgggacacttcaggcagcgagctgagtgaaggagagctggagaagagg
agaaggactctactggaacagctggatgctccttga
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