Salmo trutta (river trout): 115161302
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Entry
115161302 CDS
T08542
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
115161302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115161302
03041 Spliceosome [BR:
stru03041
]
115161302
03036 Chromosome and associated proteins [BR:
stru03036
]
115161302
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115161302
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115161302
mRNA cycle factors
Common to processing body (P body) and stress granule
115161302
Spliceosome [BR:
stru03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115161302
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
115161302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
115161302
NCBI-ProteinID:
XP_029568028
Ensembl:
ENSSTUG00000006228
LinkDB
All DBs
Position
24:39947638..39970014
Genome browser
AA seq
720 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAGLDLNSDGQGGGTGRRYIPPHLRNKEVSKNENAYSSGRQCGYS
GPPPVNFYSPGGWDGGRSNGFTNGYHDNRNGGRGGPPRNDRGFGGGQDGGGWGSAPRQDA
AYNSFGGRGKSSFYSDRGSSGGRGGYQRGGYGGGGGGNNRWQEDSRDDEDWSKPSPANER
LEAELFSSGNTGINFEKYDDIPVEATGSNCPPHIDSFHDVDMGEIIMSNIALTHYTRPTP
VQKYAIPVIKSKRDLMACAQTGSGKTAAFLVPVLSQIYTQGPGDAAAAAKNGQDSGKYGR
RKQYPLSLVLAPTRELALQIYEESRKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA
TPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQTMMFS
ATFPKEIQMLARDFLEDYIFLAVGRVGSTSENITQKVVWVEDGDKRSFLLDLLNATVIPS
DAPDVQEAAVTPGKESLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALNQ
FRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN
DKNSNITKDLLDILVEAKQEVPSWLESLGYENQHKGNTGRGRSKRFSSGGFGARDYRQTP
GGGGFGGGGRGGPRTGGHGGGSRGGFGGGGFGGGNSYGGNDAGYGGNYSHSGSGTDWWGN
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgataatccacacggtctagatcagcagcttgctggcctagac
ttgaactcagacggacagggaggaggcactggccggcgttacattccacctcacttgagg
aacaaagaggtttccaaaaacgaaaatgcatattcctctggtagacagtgtggttattca
gggccaccaccagtaaacttctactctccaggaggatgggatggcggacgcagcaacggc
ttcaccaacggttaccatgacaaccgcaacgggggacgcggcgggcctccccgaaatgac
agagggtttggtggtggacaagatggtggaggctggggaagtgctcccagacaagatgca
gcctataacagctttggagggaggggcaagtcttccttctacagcgaccgtggatcatca
gggggtagagggggttatcagcgtggagggtatggtggtggtggtggtggtaacaaccgc
tggcaggaagactccagagacgacgaggactggtccaaacccagccctgctaacgaacgg
ctggaagcggagttgttctcaagcggcaacactggtattaactttgagaaatacgatgac
attcccgtagaggccactggctccaactgcccgccacacatcgatagtttccatgatgtg
gacatgggggagatcatcatgagtaacattgcgctgacccactacacgcggcccaccccc
gtccagaaatacgctatccctgtcattaagtctaagagagacctaatggcctgcgctcag
actggctcgggtaagacggcagccttcctggtgccagtgctgagccagatctacacacag
gggcctggagatgccgcagcggctgccaagaacggacaggacagtggtaaatatgggcgc
cgtaagcagtatcccctctccctggtcctggctcccaccagagaactggccctgcagata
tacgaagagtccagaaagtttgcgtaccgctcccgcgtgcgtccctgcgttgtgtacgga
ggggctgacatcggccagcagattagagacttggagcgaggctgccatcttctggtggcc
acacctggacgcctggtggacatgatggagaggggcaagattggcctcgactactgcaac
tatttggtgctggatgaggctgacaggatgttggacatgggctttgagccccagatcaga
cgcatcgtggagcaggacaccatgccccctaaaggcatccgccagaccatgatgttcagc
gctaccttccccaaggagattcagatgctggcgcgtgacttcctggaggactatatcttc
ctggctgtgggccgcgttggctccacctctgagaacatcactcagaaggtggtgtgggtg
gaggacggtgacaagaggtccttcctcctggacctgctgaacgctacagtcattcccagt
gacgctcctgatgttcaggaggctgcagtgacacctggtaaggagtctctgacattggtg
tttgtggaaaccaagaagggagcggatgccctggaggacttcctgtaccgcgagggctac
gcctgcaccagtatccacggagatcgctcccagagagacagagaggaggcgctgaaccag
ttccgctccggacgctgccccattctggtggccaccgcggtggctgctcgtggtctggac
atctccaacgtcaagcacgtcatcaactttgacctgcccagcgacatcgaagagtacgtc
caccgtattggtcgtaccggtcgtgtggggaacctgggtctggccacgtcgttctttaac
gacaagaacagcaacatcaccaaagacctgctggacatcctggtggaggccaagcaggaa
gtaccctcctggctggagagcctgggttacgagaaccaacacaagggcaacacgggacgc
ggacgctctaagaggttttcctctggtggatttggtgccagggactaccgccagacgccc
ggcggcggtggctttggtggtggtggacgcggcggccctcgcaccgggggtcacggagga
ggaagtcgtggcggcttcggtggaggtggctttggaggcggaaactcttatggtggtaac
gacgctggctacggtggcaactacagccactccggtagtggaaccgactggtggggcaac
tag
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integrated database retrieval system
