Salmo trutta (river trout): 115161356
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Entry
115161356 CDS
T08542
Name
(RefSeq) protocadherin-17-like
KO
K16499
protocadherin delta 2
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
stru04515
]
115161356
Cell adhesion molecules [BR:
stru04515
]
Cadherins
Protocadherins
115161356
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PRIMA1
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
115161356
NCBI-ProteinID:
XP_029568145
Ensembl:
ENSSTUG00000014387
LinkDB
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Position
24:43504374..43528602
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AA seq
1107 aa
AA seq
DB search
MRLPVLFFLLFWAKARTLKNLNYSVPEEQGPGTVIGNIAKDAGFGPVEKGKKSNFRVLEN
SAPHLIDVDSESGLLFTKQRIDRETLCKRNPKCQLSMEVFANDKEICMIKIDVVDINDNS
PSFPSDHINIDISENAAAGTRFPLTIAHDSDSGQNGIKTYQVTRDDYNTFSLDLKLRGDG
TIYPELVVQRPLDREDQSHHTLLLTAIDGGEYPRSGSMQINVRVTDSNDNSPVFDKPGYM
LELPENSPPGRMLIDVNATDQDEGSNGQIVYSFSGYASDRVQELFYIDPNTGVIKIQGEI
DYEDNPTIEFDVQAMDLGPNPIPGHCKISVKVLDKNDNWPVISFVSVRQGAISEAAPPES
VIALVRVTDKDSGRNGQLQCRVLGNVPFRLQENNDNFYTLLTDRPLDRELKDEYNVTIVA
RDNGIPSLNYTKSFTVKILDENDNAPRFTKTVYVLQVPENNIPGEYLGSVLAHDPDIGQN
GTVSYSILPSHIGDVSVYTYVSVNPTNGAIYASRSFNYEQTKFFEFKVQAKDAGSPHMEG
SATVRVSVLDVNDNLPVIVLPLLLNDTAEIMVPRNVGLGYIVTTVRAVDQDHGESGRLTY
EIWEGNEEHLFEMDPVAGEVRTAHAVWEDVAPAVELVVKVTDHGKPPLSAVAKLIIKANT
GAMTAGESSASGEQQHWDMSLPLIITLCIISLMLLAVMTTIAVKSKHQDKEAENYNCRMA
EYSNSNPPVGNGKKKRINKSDIMLVQSEVEERDSVSRMNVVSSPSLITSPICFDYQATSP
LPLTLPRSEVMYLKTTFNSLTVPRAGCHSSFAGLTTETPMNRMSVIQTDNFPSEPNNMAN
RQPFAQSSSTFKDAERASLRDSGHGDSDQADSDLDTNKGCACNTSAREALKMKATAVNGQ
PLDQGQGRSVHCTDECRALGHSDRCWMPKLRVGGQADSGDNRTDLFIPVGMEATTETEIY
GSLNRSAARKTLSTFGKEQRDSTILVANIKPYFKSQRARSPQLQECSSVSNSPTKGNTPL
DSHTKGPREEVGRDGEGGSDSSAYGPPDGQCSPPHTELEEPSYMACDLRPKSLSNSLIHS
SEIRSGIISQECGGMECVSPNQRDSGD
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcttcctgttctatttttccttctcttctgggctaaagcccggacactgaaaaat
ctcaattattctgttccggaggagcagggacctggaactgttatcggaaacattgctaag
gatgccggatttggacccgtggagaaaggaaaaaaatcgaactttcgagttctggagaat
tctgctccacatctcattgatgtggattcggagagtgggctgctttttaccaaacagcgg
attgacagggagacattgtgcaaacgcaaccccaagtgtcagctctccatggaagtgttt
gccaacgacaaggaaatatgcatgatcaagattgatgtagtggatataaacgacaactcc
cccagtttcccctcagatcacatcaatattgatatttcagagaatgcagctgctgggaca
cggttccctttaacaattgcacacgactcagattctggacaaaacggaataaagacttat
caggtcaccagagatgattacaatacattttctttggacttgaaattgaggggtgatgga
accatctatcctgaattggtggttcagcgccctctagatagggaagatcagtctcatcac
accctccttttgacagccattgatggaggcgagtatccaagatcagggtccatgcaaatc
aatgtgagagttactgattcaaatgataatagcccggtatttgacaaacccggctacatg
ctggagcttcctgaaaactcaccgcctggaagaatgctgatagatgtgaatgcaactgac
caagatgagggcagcaatggacagatagtctattctttcagtggatatgcatccgataga
gtccaggagttgttttacattgatcccaacacaggtgtcattaagattcagggagaaatt
gactatgaggataatccaaccattgaatttgacgtgcaggccatggacctggggcctaac
cccatccctggccattgtaagatttcagtcaaagtgcttgacaagaatgataactggccc
gttataagttttgtctccgtccgccagggagctatcagtgaggcagcgcctccagaatct
gtcatcgccctggtgagagtcactgataaggattctgggaggaatggccagctccagtgc
agggtgcttggcaatgtaccattcaggctgcaggaaaacaacgataatttttacactctg
ctcacagacagacctctagacagggaactgaaagacgaatataatgtgaccatagtggcc
agagacaacggaataccttcgttgaattacaccaaatcgttcacagtgaaaatcttagat
gagaatgataacgcaccacgtttcaccaagacagtgtacgtgctgcaggtgcctgagaat
aacatcccaggggagtacttaggctcagttctggctcatgatccagatataggtcagaat
ggaactgtgtcttactccattttaccgtcgcacatcggagacgtgtcagtttacacctac
gtgtctgtcaatcctaccaacggagccatatacgcatcaaggtctttcaactacgaacaa
actaagttctttgagttcaaagttcaagctaaagacgcagggtctcctcatatggagggc
agtgccaccgtcagggtcagtgtgcttgacgtcaatgacaatctaccagttattgtatta
cccctcctgctaaatgatactgcggaaatcatggtacctagaaatgtaggcctggggtac
atagtgaccacagtgagagcagtcgatcaggaccacggggagagcggtcgtctgacctac
gagatttgggagggtaacgaggagcacctgtttgagatggaccctgtggccggcgaggtg
aggactgcccatgctgtgtgggaggacgtggccccagctgtagagctggtagtgaaggta
accgatcacggcaagcccccgctgtctgccgtggctaagctgatcattaaggccaacaca
ggagccatgacagcaggggagtccagcgccagcggggagcagcagcactgggacatgtcc
ctgcccctcatcatcaccctctgcatcatctccctcatgctcctggctgtcatgactacc
atcgccgttaagtccaagcatcaagataaggaggctgagaattataactgccgtatggcc
gagtactccaactccaatcccccggttggaaacggcaagaagaagaggatcaacaagagc
gacatcatgctggtgcagagcgaggtggaggagagggactctgtgagcaggatgaacgtg
gtgagcagcccgtctctcatcacctcacctatctgtttcgactaccaggcgaccagccca
ctgcctctcacgctgcccaggtcagaggtcatgtacctgaaaaccactttcaacagcctg
acggtacctcgggctggctgtcactcaagctttgcggggcttaccacagagactcctatg
aatagaatgtcagtgatacagacggataattttccttcggagccgaataacatggccaac
aggcaaccatttgctcaaagcagctcaacttttaaggatgcagagcgagcgagcctccga
gacagtggccatggtgatagtgaccaggctgatagtgacctggatactaataaaggctgt
gcctgcaacacgtctgccagggaggccctcaagatgaaagccacagcagttaatggccag
cctcttgaccagggacaaggcagatctgttcactgcacagatgaatgtcgtgcgctgggc
cattctgacagatgctggatgccaaagttacgggtaggaggccaagcagacagcggcgat
aatcgcaccgaccttttcatcccagtgggaatggaggccacgacggagacagagatttat
ggcagcctcaaccgcagcgcagccagaaaaaccctcagcacgttcggcaaggagcagcgg
gacagcaccatcctagtggccaacatcaaaccctacttcaagtctcagcgtgcccgcagt
ccccagttgcaggagtgctcctctgtgtccaacagccccaccaaagggaacacacccctg
gactcccacaccaaagggcctagggaggaggtggggagggacggggaggggggctcagac
agcagtgcctatggaccccccgacggccaatgttcaccgccccatacggaattggaggag
ccgtcatacatggcttgcgacctcaggcccaagtccctgtcaaacagccttatccacagc
tctgagatcagatctgggatcatcagccaggagtgtggggggatggagtgtgtcagtcca
aaccagcgggactctggggactga
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