Salmo trutta (river trout): 115161803
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Entry
115161803 CDS
T08542
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04137
Mitophagy - animal
stru04140
Autophagy - animal
stru04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115161803
04137 Mitophagy - animal
115161803
04148 Efferocytosis
115161803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115161803
Transcription factors [BR:
stru03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
115161803
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
HIF-1a_CTAD
PAS_11
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
115161803
NCBI-ProteinID:
XP_029568438
Ensembl:
ENSSTUG00000043318
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Position
25:complement(25522264..25560029)
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AA seq
802 aa
AA seq
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MPITSVGVLPNVYLGYTCECPYKIILLYRIWQPWFVLRLTDFVELVVQPKPGLFSRVSSE
RRKEKSRDAARYRRGKESEVFYELAQELPLPHSVTSNLDKASIMRLAISYLHMRKLLSTD
DKTVVEEQESEMDSQLNVSYLKALEGFLMVLSEDGDMIYLSENVNKYLGLAQFDLTGLSV
FEYTHPCDHEELREILVHRTGTSKKSKGPNTERSFFLRMKCTLTSRGRTVNVKSATWKVL
HCSGHVRVHEAPAEQNPCGHKDPPVSYLVLVCDPIPHPSNIKAPLDTKTFLSRHTLDMKF
TYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLIKTHHNLFVKGQVSTGQYRMLAKIG
GFVWVETQATVIYNNKNSQPQCVVSVNFVLSGIEEKMVLSLEQTEDMRSVKKELVEEEEE
DEGSEAEVSPVFLKEEKVDVIKLFTQAMEPLSLASLYDRLKEEPEALNLLAPAVGDTIIS
LDFSSPDSDILLKEVPLYNDVMLPSTSDKVALPHSMQPPSEQPLIPSASVDTKAGPDSFS
TPGSHSSTEPDIPLNFCFPMDSDISAALKLDLVERLFAIATEPKTPFTSQGMEDLDLEML
APYIPMDDDFQLRTLSPEEPLSCGPAQPLESSPLCSPLHLTQDVHSYTDSTFSAPSSRTA
SPAPELAASPCPASLLTMRAPQMDIEIYLRTLATQNSQRKRKLALYQAVGIVNGALLQDP
PGPGKKLKVSELGSSEAPSNRTILLLPTDLASCLLGISLEGSGSPFTLPQLTRYDCEVNA
PVVGRQHLLQGEDLLCALDQVN
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcactagtgtgggggtgctgccaaatgtttatctaggctacacctgcgaatgt
ccctacaaaatcatcctgttgtaccgcatttggcagccttggtttgtactgcgcttaact
gactttgtagagttggtggtccagcctaaaccaggacttttcagcagggtgagctcggag
cggaggaaggagaagtcccgggatgcagcgcgataccggagggggaaggagtcggaggtg
ttctatgagctggcccaggagctgcccctgccccacagtgtcacctccaacctagacaag
gcttctatcatgagactggccatcagctacctgcacatgaggaaactgctgagcacagat
gataagacagtagtagaggagcaggagagtgagatggactcccagctgaatgtctcctat
ctgaaggctctggagggcttcctcatggtgctgtctgaagacggggacatgatctatctc
tctgagaatgtcaacaagtacttgggtctggcacagtttgacctgacaggacttagtgtg
tttgagtacacacacccctgtgaccacgaggagctaagggagatcctggtacacagaaca
gggacctctaaaaagtccaagggaccaaacacagagcgtagcttcttcctgcggatgaaa
tgtaccctcaccagcagggggcgcactgtcaatgtcaaatcagccacctggaaggttctc
cactgctcaggccatgtgcgagtccatgaagccccagctgagcagaacccctgtgggcac
aaggacccacccgtgtcctacctggtgctggtctgtgaccccatcccccacccctccaac
atcaaggcgccgttggacaccaagaccttcctcagccgccacacactggacatgaagttc
acctattgtgacgagaggatcactgagctgatgggctatgatccagaggacctgttaaat
cgctctgtgtatgagtactaccatgccttggactcagaccacctcattaagacccatcac
aacttgtttgttaagggccaggtgagcacaggccagtaccgcatgctggctaagataggt
ggctttgtgtgggtggagactcaggccactgttatctacaacaacaagaactcccagccc
cagtgtgttgtctctgtcaactttgtgctcagtggcattgaggagaagatggtgctgtct
ctggagcagactgaggacatgaggtctgtaaagaaggagctggtggaggaggaagaagag
gacgagggctcagaggcagaggtgtcccctgtattcctgaaggaggagaaggtggatgtg
attaagctgttcacccaggcaatggagcccctgtcgctggccagcctgtacgacagactg
aaggaggaaccagaggccctcaaccttctggcccctgccgtaggagacaccatcatctcc
ctggacttcagcagccccgactctgacatcctgctgaaggaggtgcctctctacaacgat
gtgatgctgccctccaccagtgacaaggtggccctgcctcactctatgcagccccccagt
gagcagcccctgatccccagcgcctcagtggacaccaaggcaggtccagactccttcagc
accccaggcagccacagctcaactgagcctgacatcccactgaacttctgttttccaatg
gactctgacatcagtgctgcgcttaaactggacctggtggaaagactgtttgccatcgcc
acagagcccaagacacctttcacctcacagggcatggaggacctggatctggagatgttg
gctccatacatccccatggatgatgacttccagctgcgcaccctgtccccagaggagccc
ctgtcatgtggcccagcccaacctctggagagctctcctctgtgctctcctctgcacctc
acccaggatgtccacagctacactgattccacctttagtgccccaagcagccggacagct
tccccagccccggagctggctgctagcccttgccctgcctccttactcaccatgagggcg
cctcagatggacatagagatctacctcaggacactggccacccagaactcacagcgcaag
agaaagttggctctgtatcaggctgtcggaatagtaaatggggcattgctccaggaccct
cctgggccgggtaaaaagctcaaggtgtctgagctgggcagctctgaggctccctccaac
aggaccatactgctcctacctacagacctggcaagctgcctgcttggcatctccttggag
ggcagcggctcgcccttcacccttccacagctgacccggtatgactgtgaggttaatgcc
cccgtggtgggtcgccagcacctgctgcagggcgaggatctgctgtgtgccctggaccaa
gtcaactga
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