Salmo trutta (river trout): 115161826
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Entry
115161826 CDS
T08542
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
stru
Salmo trutta (river trout)
Pathway
stru04140
Autophagy - animal
stru04148
Efferocytosis
stru05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115161826
04148 Efferocytosis
115161826
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115161826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115161826
Membrane trafficking [BR:
stru04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
115161826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
115161826
NCBI-ProteinID:
XP_029568479
Ensembl:
ENSSTUG00000015464
UniProt:
A0A673YQ90
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Position
25:2941663..2980199
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AA seq
876 aa
AA seq
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MHDAYESVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLFVVSQYKILISLLENNIHVHDLLTFQQITVVSKARGATLFACDLQQSPSGE
AQLRMCVAVKKKLQLYYWKDREFYELQGDFAAPDIPKSMAWCQNSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQSPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLANMKDDVEGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPTDYRKQLHYPNPLPSLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSNPSTPSPLMEGIPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLDNNHCHIEES
EYILKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGMENLV
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAVPYLEHIIHVWE
ETEPEFHNVLIQMYLERVQGLMKQYLNSLPEGVPAVAAGKEEGDLGEFRNKLLCFLEVST
SYEPGRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTHMAEEYCHRHYDKETD
RNQDVYLSLLRMYLSPPDVHCLGPIKMELLEPQANLMAALHVLELHHSKLNTTKAIDLLP
ANTQIREIRVFLESVLEEKAQRKRFDQVLKSLLQAEFLRVQEERIFHQQVKCIITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRAVCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcgtacgaatcggtccctatcctggagaaactgcctcttcagattgactgt
cttgctgcttgggaggactggcttctggttgggactaaaccaggtcatctcctgctctac
aggataaaaaaggatgcaggtaccaacaggtttgaggtgacgctggagaaatccaacaag
aacttctccaagaagatccagcagctgtttgttgtgtcacagtacaagatcctcattagt
ctattagagaacaatatccatgtccatgaccttttgaccttccagcagattactgtggtc
tccaaggccagaggggcaacgctcttcgcctgtgacttgcagcagtccccctcgggagaa
gcccagctgaggatgtgtgttgctgtgaagaagaagcttcaactgtattactggaaggac
agggagttctacgagctgcagggggactttgctgctccagacatccctaagtccatggcc
tggtgtcagaactccatctgtgttggcttcaagagagactactacctcatccggatggat
ggtcgtggctccatcaaggagctcttccccacggggaagcagctagagcccctggtggcc
cccctggctgatgggaaggtggcggtgggccaggatgacctcacggtggtgctcaacgag
gagggggtctgcactcagaagtgtgctctcaactggaccgacatccccatcgcaatggaa
catcagtccccctacatcatagctgtcctgccccgctatgtggagatcaggacctttgaa
cccagactgctggtccagagtgtggagctgcagagaccacgattcatcacatcagctggg
cccaatatagtgtacgttgccagcaaccattttgtgtggcgcctggtacctgtgtccatc
gccagtcagatcagacagttactacaggacaagcagtttgaactggccctgcaactggct
aatatgaaggatgatgtggaaggagataagagacagcagattcaccacattcagaatctc
tatgccttcaatctgttctgtcagaagaggttcgatgactccatgcaggtgttcgctaag
ctcggcacagatccgacccatgtgattggtctgtatccggacctgcttcccactgactac
cgtaaacagctgcactaccccaaccctttacccagtctgtctggagcagagctggagaag
gctcacctcgcactcatcgactacctgacgcagaaacgcagtcacctggtgaagcagctg
aacgactcgaacccgtccacgccgtctcccctcatggaaggaattcccaccatcaagagc
aggaagaagcttctgcagatcatcgacaccacgctgctcaaatgctacctgcataccaac
gtggccctggtgtcccctctgttgcgtctggataataaccactgtcacattgaggagagt
gagtacatcctgaagaaggcccacaagtacagcgagctcatcatcctctatgagaagaag
ggcctgcatcagaaagccctgcaggtgttgttggatcagtccaccaaggctaactctcct
ctaaagggacatgagaggacggtgcagtacctccagagactggggatggagaatctggtc
attatctttgagttctctccctgggttctgaagatctgtcctgaggacggactcaagatc
tttactgaagacctgacggaagtagagacccttcccagagacaaggtcctgaacttcctg
aaggagggttttaaggagctggctgtcccctacctggaacacatcatacatgtctgggag
gagaccgagccagagttccataacgtcctcattcagatgtacctggagagggtccagggg
ctcatgaagcagtacctcaactccctgccagagggggttcctgcagtggctgctgggaag
gaggaaggggacctgggagagtttaggaacaagctgctatgtttcctggaggtctctacc
agctacgagcctggacgtcttatcagtgacttcccctttgatggtcttctggaggagcgg
gccctgctgctgggtcggatggggaaacatgaacaggccctcttcatctacgtacacgtc
ctgaaggacacacacatggcagaagagtactgtcataggcattatgacaaagagacggac
agaaaccaagatgtgtacctgtctctactgcgcatgtacctgtcccctcctgacgtccac
tgtcttgggccaatcaaaatggagctgttggagccacaggccaatctaatggcagctcta
catgtcctggagcttcaccacagcaaactgaatacaactaaggccatcgacctgctgcca
gccaacactcagatcagagaaatccgtgtgttcttggagagtgttctggaggagaaggct
cagaggaaacgttttgaccaggtcctcaagagtctgctgcaggccgagttcctacgggtc
caggaggagcgcatcttccaccaacaggtgaagtgtatcatcacagaggaaaagacctgc
agggtctgtaagaagaagataggaaacagcgccttcgccaggtatcccaacggtgttgta
gttcattatttctgctgtaaggaccgagcggtgtgtcctacggagcagtga
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