Salmo trutta (river trout): 115162122
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Entry
115162122 CDS
T08542
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115162122
03015 mRNA surveillance pathway
115162122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115162122
03041 Spliceosome [BR:
stru03041
]
115162122
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115162122
Spliceosome [BR:
stru03041
]
Complex C
Other components
EJC/TREX
115162122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Aconitase_C
Motif
Other DBs
NCBI-GeneID:
115162122
NCBI-ProteinID:
XP_029568969
Ensembl:
ENSSTUG00000009832
UniProt:
A0A673XLR7
LinkDB
All DBs
Position
25:complement(19375151..19381390)
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AA seq
680 aa
AA seq
DB search
MAVAVGSLQAQLEKAKESLKNVDDNIRKLTGRDPNELRPGQARRPTIPGVGGRGRGINLL
RRGLSDIGGGPGGPPAKQRDIEGALLRLAGDQRARRDSRHDSDAEDDDDVKKPALQSSVV
ATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESNVATDRQKKRIEIEQKL
EVQAEQERKKVEGERRELFDERRAKQTELKLLEQKVELAHLQEEWNVHNTKIVKYIRTKT
KPPIFYLPGRMCSATQKLFDESQKKMNVMFEERREAFAEYLNKMEARPRRQSLRDNALGK
DLKKEEQEEGKPTGQVVKVTGNRFNVEMEDEATLEKEEGDVGVKRKEDRKKKPGEKVEEQ
ATKGENEENGQDIRIVEFREMEEQMEVTAVVREAEGQVGDKMEDSLVIGGAEVGNEKRVA
EQQQQVKVGKKNKPLQNQDPTAVSDDQKKSFEMQPTDDEELQTEVSIPLLSEPNPSLEVS
DGASIAPEVQIPLLETGTEPLTTEQSQEAYQGSMKQTANVQPAQDDAAPKELEPLIEESS
RGRGKSKSKDKKGDGGGGSSSSSSSSSGSSSSGSSGSSSGSSSRSSSSSGSSSSSSSSRS
RSRGRKDRKHRRKPSERERKKGGGDKSQKSSMGSGRESKGSKDKGSKSDRKRTSSEGCRS
GKMSSRSDRDRKSDRKEKRR
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagtaggttctttgcaagcccagcttgagaaagctaaagagagtttgaaa
aatgtagacgataatattcgtaaattaactggccgggatcctaatgaattgagacctggc
caagctagaaggccaaccatcccaggcgttggaggtagggggcgaggaatcaacttgttg
agacgtggactctccgacattggtggaggacctggaggacccccagctaaacagagggac
attgaaggggcccttctcaggctggccggtgaccagcgagcgaggagagattcacgccat
gacagtgacgcagaggatgatgacgatgtcaaaaagccagcgttgcagtcatcagtagta
gctacctccaaggagcgtacgcgtcgagacctgattcaggatcagaccatggatgagagg
ggaaaacaaaggaatcgacgcatgtttggcctgttgatgggaacgctacagaaatttaag
caggaatctaatgtggcaacagataggcaaaagaaacgcattgagattgaacagaaattg
gaagttcaagctgaacaagaacgcaagaaagtagagggcgaaagacgagagctctttgat
gagaggcgtgccaagcagacagagctgaaactgttggaacagaaagtggagcttgctcac
ttgcaagaggagtggaatgtgcacaatacaaaaattgtcaagtacatccgcacaaagacc
aagccacccatcttctatctgcctgggaggatgtgctcagccactcagaagctctttgat
gagtcgcagaaaaaaatgaatgttatgtttgaggagagacgcgaggcgtttgccgagtat
ctgaataagatggaggctcggcctcgacgccagtctctgagggacaacgctttgggtaag
gacctgaagaaagaagaacaagaggagggtaagcccacgggtcaggtagtcaaagtgaca
ggtaatcggtttaatgtggagatggaggacgaggcaacactagagaaggaagagggggat
gtgggtgtaaagcgtaaggaggatagaaagaaaaagccaggagagaaagtcgaggagcag
gcaactaagggggagaatgaggaaaatggtcaagacattagaatagtagagttcagagag
atggaagagcagatggaggttactgcagtggtgagggaggctgaggggcaggttggtgat
aagatggaggatagtttggtgataggtggggcagaggtaggtaatgagaagagggtcgca
gaacagcagcaacaggttaaggtaggaaaaaaaaataagccccttcagaatcaggacccc
acagctgtgtcagacgaccagaagaaaagctttgaaatgcaaccaaccgacgatgaagag
ctgcaaacagaagtgtccatacccctgctctcagagcccaaccctagtctggaagtctct
gatggagcatctatagcccctgaggttcagatccccctgctggagactggaacagagcct
ctcacaacagagcagagccaagaggcttatcaaggctcaatgaagcagaccgctaatgtc
cagcctgcccaggatgatgctgcccccaaggagctggagcctctgattgaggaatcaagc
aggggacgtggaaagtccaagtcaaaggacaagaagggagatggtggtggtggtagcagt
agctcctctagcagctcctctggctcctcgtccagcgggagctccggctcctctagtgga
tcctccagcaggagcagctcctccagcggcagctcctcttccagctcctctagcaggagc
cgcagccgggggaggaaagacaggaagcataggaggaagccgtctgagagggagaggaag
aagggaggtggtgacaagagccagaagtcatccatgggcagtggtcgtgaatccaaaggt
tccaaagacaagggctctaagtctgacaggaagaggaccagctctgagggctgccggtca
gggaagatgtcctctcgcagtgaccgggatcgcaagtctgataggaaggaaaaaagacgt
taa
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