Salmo trutta (river trout): 115162433
Help
Entry
115162433 CDS
T08542
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115162433
03015 mRNA surveillance pathway
115162433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115162433
03041 Spliceosome [BR:
stru03041
]
115162433
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115162433
Spliceosome [BR:
stru03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
115162433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
115162433
NCBI-ProteinID:
XP_029569592
Ensembl:
ENSSTUG00000048860
LinkDB
All DBs
Position
25:complement(32392692..32415947)
Genome browser
AA seq
873 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVVKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDDEKKEKENKENRERESPRRRKSRSQSPRRRSP
VKRERKRSHSRSPRRKPSPSSSPPPPAPAVTLVSVTLPQSTEEPQPEPDTSESTIPEPVI
QEASSTSDVVKPDTVVVVPDSVTEVKEPSPDKAPKKERPKPREREKDSRRERPHHRSRSH
SRSRRRPRSRSRSYSPRRRPSPRRRLSPRRRSPPRRGPPGPRHRRSRSPVRRRRSRSPSS
SGSSSTSHSPHKKAMKRTSTTPPRKQPRGHAADPSLSPSRRRAPNGSPSGKTQRSASPRA
RKGRASASPSRSAGSKKKPGTRNDSPSPVPKPRQSEASESEGATADSVQQRRQYRRQNRE
TSSEAGSSSSSEGEGSKRPGGGPVARNGDVRRRRSHSPSSPRRRHRDGSPRKRRSPSPGG
RRSPPRRRRSPSPPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPTPLGPQKRRLSGSPSP
KRLSPVPKRRPSRSPKRRSPPPQKRRTPPSSTSPPRHRRSPMLPSNRPGRDTRSPPPAHS
NRLSPSPANRGRASPQGRFDTSPPGQRRQVSPSHGNRAIRRVSRTPEPRKNQRASQSPQP
MRRVSSMSPSGSPKPGALKRPASGSPSPGRSASGSPPAPPAKKASSGSGSPSPNKNSDTE
PGGKKNKKKKKEKKHKKEKKHKKHKKHKKEKCDVPVAAGDDQENQGMEGDADSNPKKESD
SEVEECLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggttcttccgcggcacaagtgcagaacaggacaatcgcttcagcaacaag
cagaagaaacttctaaagcaactgaaatttgcagaatgtctggaaaagaaggtggatatg
accaaggtgaacctggaggtcgtcaaaccttggatcactcagcgagtgacggagatcctg
gggttcgaggatgacgtcgtcatagaatttatatttaaccagctggaagaaaagcacccg
gacagtaagatgatgcagatcaacctgacgggcttcctgaatgggaagaatgccagagag
ttcatgagggacctgtggcctctgctgctcagcgctcaggacaacatcgccggtatcccc
tccgccttcctagagcagaagaaagaggagatcaaacagagacagattgagcaagagaag
ctcgcctctctgaagaagattgatgatgagaagaaggaaaaggaaaacaaagaaaacaga
gaaagggagagccccagaaggaggaagtcaaggtcacagtctccacggcgacgatctcca
gtgaagagggagaggaagcgcagtcactcccgctccccgaggcgtaagcctagtcccagc
agctcccctccaccaccagccccagctgtcaccctggtcagtgttaccctgccccagagc
actgaggagccccagcctgagccagacacctcagagagcaccatacctgagccagtcatt
caggaggcctcctccaccagtgatgtggtgaagccggacactgtggttgtggtacctgac
tcagtcacagaggtcaaagaaccctccccagataaggctcctaaaaaggagaggcccaag
cccagggaaagggagaaggacagcaggagagaaaggccccaccaccgctctcgctcccat
tcccgctcccgcagacgacccagatcacgctccagatcttactccccccggcggaggccg
agccccaggagacggttgtcccctcgtcgtaggagcccccccagacgtggccccccaggc
cccagacacaggcgcagtcgctcccctgtccgcagacggcgctctcgctccccatcatcc
tctgggagcagctccacgtctcattcacctcataagaaggcaatgaagagaacgtcaacc
acaccacccaggaaacagccccgcggccatgcagctgacccctccctcagcccctccagg
agaagagcccccaatggcagtccctctgggaagacacaacgctctgcctccccgcgggcc
agaaagggccgggcctcagcctccccatccagatcagctggttcaaagaagaaaccagga
acgaggaacgattcaccgtctcctgttccgaaacccaggcagtctgaggcatcagagtca
gagggggctacagccgattctgtgcagcagcgacgtcagtatcgcaggcagaatcgggaa
acgtcttcagaggctggatcatcatcatcatcagagggtgaggggtccaagaggccgggc
ggggggccagtggcgaggaacggggatgtcaggaggcggcgtagtcactcgccctcctcc
cccaggagacgacaccgggacggctcccccagaaaaaggcgctctccttcccccggagga
cgcagatctcccccaagacgtcgcagatctccctctcctcctcctaggcgcaggtctccc
tctccaccacctcgcagacgctcgccctccccaagaaggtactctccccccatccagcgc
cgatacagccccactcccctgggcccacagaaaagaaggctatcagggtctccctctccc
aaacgcctatccccggtgcccaagcgccgtccctcaaggtcccctaagcgcaggagtccc
cctccccaaaagagacgcacacctccctcatccacctctccccccagacacaggagaagc
cccatgctcccatccaaccgaccaggccgggacactcgctccccccctcctgctcacagt
aaccgcctgtccccttcccctgccaaccgtggccgagccagtcctcaggggcgctttgac
acctctccacctggccagaggcgccaggtgtccccctcacacggcaacagggcaatccgc
agggtgtcccggacaccagagccccgcaagaaccagagagcctctcagagcccccagccg
atgaggagagtgtcatcaatgtcaccgtctggttcccctaaaccaggagccctgaagcgg
ccagcttcaggctccccctctccaggccgctcagcgagtggatccccacctgcacccccg
gctaaaaaggccagcagcggctctggcagcccttctccaaacaagaattctgacaccgag
cctggaggaaagaaaaacaagaagaagaagaaggaaaagaaacacaagaaggagaagaag
cacaagaaacacaagaaacacaagaaggagaagtgtgatgtgccggttgctgctggggat
gaccaggagaaccaggggatggagggggatgcagactccaacccaaaaaaggaatcagac
agtgaagtagaagagtgtctggacgacctggagaagcacctgagagagaaggcactgcgt
tccatgaggaaagctggaaagctgtcccctccactgtcctga
DBGET
integrated database retrieval system
