Salmo trutta (river trout): 115162521
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Entry
115162521 CDS
T08542
Name
(RefSeq) homeobox-containing protein 1-like isoform X1
KO
K24885
homeobox-containing protein 1
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115162521
Transcription factors [BR:
stru03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
115162521
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
AbiJ_NTD3
HTH_3
HTH_31
HTH_26
DUF494
Motif
Other DBs
NCBI-GeneID:
115162521
NCBI-ProteinID:
XP_029569754
Ensembl:
ENSSTUG00000020701
LinkDB
All DBs
Position
25:37721820..37752795
Genome browser
AA seq
579 aa
AA seq
DB search
MQCKLAANMAIIKDYKCHDDLDETAESRQRMSQFTDEPRFTIEQIDLLQRLRRTGMTKPE
ILHALDTLDRLDRQHGHKFGRRPQTQPQPVGQGPTSNSNANMTSSSSSNNVVASSSTSTA
ATQTGYRANGSGGSGLSPSPSNNYDMSPPPPAVVSAPVALAAAAQNGCGVGGGGEIVAMT
NGKLSPPRFPIGVSAVSGGVTGRGYGFEASEEELDVDDKVEELMRRDSAIIKEEIKVFLG
NRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTTPGATLTMRPAP
MSLEDVVEWRQTPPPVSSTPGSFRLRRGSRFTWRKECLAVMESYFNDNQYPDEAKREEIA
NACNAVIQKPGKKLSDLEKVTSLKVYNWFANRRKEIKRRANIEEAAILESHGIDVQSPGG
HSNGDDIEGNDFPDQGCEVPLFEKRAVTRPFSRLDLSSPTQVPTLLPSWLAAWPGSGRGG
LAAQRASSLIGRSLLSGWGLAQGVGMEGSRLTGVSWSPPSPQDDDSTNHSNALEHQDPIA
LAVEMAAVNHSILALATQAGGGLALGGTGSDIKTEVLDD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgcaatgcaaattagctgctaatatggctatcataaaggactacaaatgccatgatgac
ctggacgagactgctgaatcgaggcaaaggatgtctcagttcacagatgagcctcgcttc
accatcgagcagattgacctgctccaacggctgaggaggactgggatgaccaagccagag
atcctccacgccctggataccctggacagactggaccgccagcacggacacaagtttgga
cgccgaccccagacgcagccccagcctgtcggtcagggaccgacgtccaatagcaatgct
aacatgacgtcatcttcctcgtccaataacgtcgtggcgtcctcgtccacgtccacggcc
gccacacagactggttaccgggcgaatgggagtggcgggagtggtctgtcgccgtcacct
agcaacaactatgatatgtcgccgccccctccggcggttgtttctgcccctgttgctttg
gcagcggcggctcagaacgggtgtggggttggtggcggcggagagattgtcgccatgacg
aacggaaagctgtctccaccacggtttcctatcggtgttagtgcggttagtggtggcgtg
actgggagaggctacgggtttgaggccagcgaggaggaactagacgtggacgacaaagtg
gaggaactcatgagaagggacagtgccataatcaaggaggagatcaaggtgttcctgggg
aacaggcgcatctctcaggccgtggtggctcaagtcacaggtatcagtcagagtcgtatc
tcccactggctgctccagcagggctcggacctcagtgaacagaagaagagggccttctac
cgctggtaccagttggagaagaccacccccggtgccactctgacgatgcggcccgccccc
atgtctctggaggatgtggttgagtggcggcagactccgccccctgtaagctccaccccc
gggagcttccgcctgcgccgaggcagtcgcttcacctggaggaaagaatgtctggctgtg
atggagagttacttcaatgacaaccagtaccctgatgaagctaaaagagaggagatcgct
aacgcctgcaacgctgtcatccagaaaccagggaagaagctgtctgatctggagaaagtc
acatctctgaaggtctacaactggtttgccaaccgccgcaaggagatcaagagacgcgcc
aacatagaagaagcagcaatcctggagagccatgggatcgacgtccagagtcctggagga
cactccaacggcgatgacattgaggggaatgacttccctgaccagggctgtgaagtccct
ctgtttgagaagagagctgttaccagacccttcagtcgactagacctgtcctctcccaca
caggtgcccaccctgctgcccagctggctggcggcttggcccggctcgggcagggggggc
ttggccgcccagagggctagctctctgattggccgctccttgctctctgggtggggtctc
gctcagggggtggggatggaaggttccagactgacaggtgtgtcctggtctcccccctcc
ccccaggatgatgactccaccaatcacagcaatgccctggagcaccaggatcccatcgcc
ctcgccgtggagatggcggccgtcaatcacagcatcctcgccctggcaacgcaggcgggg
ggaggattggccctgggcgggacaggaagtgacatcaaaacagaggtgctggacgactag
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