Salmo trutta (river trout): 115162843
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Entry
115162843 CDS
T08542
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04382
Cornified envelope formation
stru04510
Focal adhesion
stru04512
ECM-receptor interaction
stru04518
Integrin signaling
stru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115162843
04518 Integrin signaling
115162843
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115162843
09142 Cell motility
04820 Cytoskeleton in muscle cells
115162843
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115162843
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stru04147
]
115162843
00536 Glycosaminoglycan binding proteins [BR:
stru00536
]
115162843
Exosome [BR:
stru04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115162843
Glycosaminoglycan binding proteins [BR:
stru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115162843
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115162843
NCBI-ProteinID:
XP_029570119
Ensembl:
ENSSTUG00000019437
LinkDB
All DBs
Position
26:complement(42566..234666)
Genome browser
AA seq
1674 aa
AA seq
DB search
MTVSTCCTTWTKLPLWWLVIMVVAGQTVMGGDQPEGLCGGRDCSTCQCFPAKGAQGVPGV
LGRQGPQGPPGFPGPQGPLGEKGYRGEEGFPGVSGPKGDVGIAGVPGYPGLDGVPGHPGP
GGVPGLPGLDGCNGTKGDSGFPGIHGLDGRDGGAGFPGIKGVPGDPTVQFIQYPGIPGDV
GRVGVTGLPGFQGISGPRGPTGPVGLDGSDGLTGSPGLRGPPGEKGRSLPGQKGDEGDQG
TQGPPGPFEFVDPPEDFYIKGSQGRRGVKGECGPRGSDGFDSLTGIKGEKGIIGFPGVRG
LSGYPGFPGPPGVKGILGSPGLPGLIGTEGPKGFQGDLGPKGLTEFRPVNYTACRGMLGE
LGLPGRPGPPGDVGEMGMHGRQGLPGVSIPGTNGELGPIGITGIKGFKGEPGMNYQNGPT
PGEPGKPGTAGLNGLKGERGPPGCGGTYCTPGSPGEPGADGDQGPPGSAGFPGSKGGDGD
CDCELLPPSKGDPGLVGIPGLPGLPGLCGAPGLRGNIGFPGDIGRSGADGFPGFAGVRGP
KGQKGDVYLCIKGVKGDIGLPGPAGRPGFTGRRGDEGKPGAPGDAGPEGDSYSGFPGERG
YPGYDGPKGLAGPVGPPGPDVIGAVGERGLPGDQGPPGFRGSPGLKGVRGDTLPCIPSNP
GAPGQKGDSGCPGLNGESGPPGYLGALGPDGVKGEKGDFGLSGPPGPIGSVGCVGDSGEA
GAEGLSYDGAAGSPGFRGFPGLKGPLGDSVPGAPGPMGLKGVVGLSGPKGVPGPPGPIGL
TGAAGLPGTPGRKGEQGESGATGRYGAPGPTPEQCVKGASGLQGSMGLIGDIGPPGYAGE
KGDNGEEGLSGTGPKGAAGKPGSPGFSGYRGAQGPVGTLGDPGIPGAQGQKGIIGVPGRD
GSVGGPGRSGALGPPGRKGERGFDGQRGLPGDEGLKGEKGRKGVPGVAGVTNFIPIKGRT
GAPGTPGLDGFTGPRGDKGPVGGRGQPGYPGLLGGPGIEAGPQGPPGTCGHSGEPGLPGL
PGQRGIIGFPGEIGDQGESGCTGSPGTPGFPGYSGLKGEQGDSIGIPGPAGDRGATGDTG
AFAPPGDQGDVGEPGFSGAPGPKGLTGPQGSIGPLGPAGVIGPPGPSGKPGADGLPGTPG
QTGPKGDQGPLGLKGPPGPLGLHGLDGLKGVKGEVGARGPGVPGPSGAPGCKGEKGSRGY
QGPQGPSQPGPLGPKGQSGLTGSPGDTGASGLPGMDCKESMPGHCGESGFPGLDGPPGST
GDIGYSGPALPMTGEEGDNGVPGLPGLKGDKGASGPPGLPGIAGLPGPKGERGASGMMGV
PGHPGSTGTCGPPGPKGTKGLQGDAGPKGENGNVITPLIIPPPPGPVGAPGQPGLPGFTG
GPGSNGFEGQKGRSGQLGSPGFPGPKGPPGVDGAPGDSGVQGETGALGPQGAPGPSGDAG
SPGPTTTFNSGFLLVMHSQSDMLPSCPADMTQLWTGYSLLYLEGQEKAHTQDLGQAGSCM
RLFSTMPFSYCNMGTCDYASRNDKSYWLSTTAAVPMMPVADQDIQQHISRCVVCEAPSPA
VAVHSQDNSNPFCPPNWRSLWVGYSFLMHTGAGDEGGGQSLTSSGSCLRDFRAQPFVECQ
GPRGTCHYFANIYSFWLTRVGSDGTLSPSTSQGTLKEEWQHRLNVGRCSVCMKE
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgacggtctctacctgctgcaccacctggaccaaactccctctctggtggcttgtgata
atggtcgttgctggacagactgtaatggggggggaccaaccggagggactctgtgggggg
cgggactgttctacctgtcagtgtttccctgccaaaggagctcagggtgttccaggagtt
ttaggacgacaggggcctcaggggccaccagggttcccgggcccccaggggcctcttgga
gagaagggctatcgaggagaggagggcttccctggcgtatctggaccgaagggagacgtg
ggtatcgctggcgtaccaggatatcctggactagatggtgtcccgggtcaccctgggccg
gggggtgttcctggtctaccagggcttgatggctgtaacgggaccaaaggggacagtggt
ttccctggaatccatggtctggacgggcgtgatgggggagcgggtttcccagggatcaaa
ggagtgccaggggaccccaccgttcagttcatccagtaccctggtatacctggtgatgtc
ggccgtgttggggttactggactgcctggcttccaaggcattagcggccctaggggacct
actggaccagttggtttggatggatcagatggtttaactggttcacctggcctgagaggt
ccgcctggagagaaaggaagatcattgccaggacagaaaggagatgaaggagaccagggt
acccaaggacccccaggaccctttgagtttgtggaccccccagaagacttctacatcaaa
ggaagccaggggaggagaggtgtgaagggagagtgtggaccaaggggaagtgatggattc
gactcgttgacaggaataaaaggagaaaagggaatcatcggatttcctggagtcaggggt
ctttctggatatcctggcttccctgggccacctggtgtaaaggggattctcgggagccct
ggcctacctggtctgataggaacagagggacccaagggtttccaaggagatctaggtccc
aaaggactgacagagttcaggccggttaattatacagcttgtagagggatgctaggggag
ttggggttgcctggaagaccaggaccccctggagatgttggggagatggggatgcacggc
cgccaaggactgcctggggtatcaatacctggtaccaatggtgagcttggcccaataggg
atcactggcatcaaggggtttaaaggagagccagggatgaactaccagaacgggcctaca
cctggagagcctggtaaaccgggcacagcaggcctcaatggtctgaaaggagagcgcggc
cccccaggttgtggaggtacgtactgcacccctggttcaccaggagagcctggagcagat
ggagatcaaggtcctcctggatctgcagggttccctggtagcaaaggaggtgatggtgat
tgtgattgtgagcttctcccgccttcaaagggagaccctggcctcgtggggattccggga
ttgccagggttaccaggactttgtggggcaccaggcctgaggggcaacattggttttccc
ggagacataggaagaagtggggcagacggcttcccaggatttgcaggtgtccggggtcca
aaaggtcagaaaggtgacgtctatctatgcattaaaggtgtgaagggagacattggcctc
ccggggccggctggtcgtccaggcttcactggaaggagaggagacgaagggaagccaggt
gcgcctggtgacgccggcccagagggtgacagttactcaggattccccggtgagagaggg
tatccaggttatgatgggccaaaggggcttgctggacccgtcggccccccaggacctgat
gtgattggggcagtgggggaacggggactcccaggtgaccagggacctccaggattcagg
ggatctcctgggctcaaaggagtcaggggtgacaccctaccctgcatacccagtaaccct
ggtgccccaggacagaaaggcgattccggatgcccagggctgaacggagagtcaggaccc
ccaggctatcttggagctttgggcccggacggggtgaagggagagaaaggagactttggg
ctgtctggcccacctggacccataggctcagtggggtgtgttggagactctggagaggct
ggtgctgagggtctgagctacgacggagctgccggctctcctggcttccgagggtttcca
ggactgaagggcccattaggggactctgtccctggtgctccaggacctatgggcctcaag
ggcgtagtggggctgtcggggcccaaaggagtgccaggtccacccggtccaatcggatta
acaggtgctgcggggcttcctggtacaccgggaaggaagggggagcagggagagagtggt
gccacaggcagatatggggccccagggcccacccctgaacagtgtgtaaagggggcctca
ggccttcaaggatccatgggactaataggggacataggccctccaggttacgcaggcgag
aagggtgataacggagaggagggtctgtccggcacgggtcctaaaggagctgcagggaaa
ccgggctctccagggttttctgggtaccgtggagcccagggccccgtggggacattaggg
gaccctggcatacccggggcccaagggcagaaaggtataataggggtacctggtagggat
gggtcagtgggtggtccagggaggagtggagcactaggacccccgggaaggaaaggagag
aggggcttcgacggtcaacgaggcttaccaggagatgagggcctcaaaggagaaaagggt
agaaaaggtgtccccggagtcgcaggagtcaccaacttcattcctatcaaaggacgaaca
ggagctcctggaaccccaggtctggatggcttcactggtccaagaggtgacaagggtcct
gtgggaggcaggggtcaaccagggtacccagggcttttgggggggcctggcatagaggcc
gggcctcaaggaccacctggtacatgtggacactcaggtgaacctggactacctggcctg
cctggccagaggggtatcataggcttccctggagagattggtgatcagggtgaatctggg
tgtactggatctcctggcacacctggcttcccagggtacagtggtcttaaaggtgaacag
ggcgactctattggcatccctggaccggctggtgatagaggagctacaggagacactgga
gcatttgccccaccgggtgaccaaggtgatgtaggtgaaccaggattttcaggagctcca
ggacctaaagggttaactggtccgcaaggatccatcggacctctagggcctgctggtgtg
atcggacccccaggcccgagtggtaaacctggggctgatggtctcccagggacccctgga
caaactgggcccaagggagaccaaggaccccttggactcaaaggtccacctggaccactg
ggtttgcatggactggacggactgaagggtgtgaagggcgaggttggggccagaggccca
ggtgtgcccggtccctctggtgctccaggctgtaaaggagagaagggttccagagggtat
caagggcctcaggggccctctcagccaggacctctgggccccaaaggccagtctggacta
acaggaagcccaggagacacaggtgcctccggtctaccaggcatggactgtaaggagtcc
atgcccggccactgtggggagtcaggcttccctggactcgacggaccaccaggttcaaca
ggtgacattgggtactccggccctgccctgcccatgaccggtgaagaaggagacaacggt
gtgcccggcttaccagggctcaaaggggacaagggtgcttcaggcccccccgggctgcct
ggcatcgcagggttacctgggcctaaaggtgagagaggagcttcggggatgatgggggtc
ccaggacaccccggttccacaggaacatgtgggcccccaggacccaaaggaaccaaggga
ctgcaaggagatgcaggtccaaaaggagaaaatgggaatgtgatcactccattgataatc
ccacctcctcccggacccgtaggcgcacccggtcaaccaggccttcctgggttcactggc
ggcccgggatccaacggttttgagggacagaaagggagaagtggccagttggggtcacca
ggattcccggggcccaagggccccccaggagtagacggggccccaggagacagcggggta
cagggggagacgggggcattgggaccacagggcgccccaggtccttcgggagatgccggc
agcccaggccccaccaccacgtttaactctggcttcctgttggtgatgcacagccaatca
gacatgctcccttcctgtccagcagacatgacacaactgtggactggctacagtctgctg
tacctggagggccaagagaaagcccacacacaggacctcggtcaggccgggtcatgtatg
cgtctcttcagcaccatgcctttctcctattgcaacatgggcacgtgtgactacgccagc
cgcaatgacaagtcctactggctgtccaccacagcggcagtgcccatgatgcccgtggcg
gaccaggacatccaacaacacatcagccgctgcgtggtgtgtgaggccccttcccctgct
gtggcagttcacagccaggacaacagcaatcccttctgtccccccaactggaggagtctc
tgggtgggatactccttcctcatgcacacaggggccggcgatgagggtggtggccagtct
ctgacatcatcaggaagctgcctgagggacttccgtgcccagccgtttgtggaatgccag
ggcccgcggggtacgtgccactacttcgccaacatctacagcttctggttgacccgggtg
ggctcagatggaacgcttagcccctcaacttcacagggcacgctcaaagaggagtggcaa
caccgcctcaacgtaggccggtgcagcgtgtgtatgaaggagtga
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