Salmo trutta (river trout): 115163185
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Entry
115163185 CDS
T08542
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04137
Mitophagy - animal
stru04140
Autophagy - animal
stru04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115163185
04137 Mitophagy - animal
115163185
04148 Efferocytosis
115163185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115163185
Transcription factors [BR:
stru03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
115163185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_11
bHLH_HIF1A
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
115163185
NCBI-ProteinID:
XP_029570717
Ensembl:
ENSSTUG00000020772
UniProt:
A0A673ZTX9
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Position
26:13728809..13753506
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AA seq
628 aa
AA seq
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MDTKEKPVGKRSSTAQRKVRSRDAARCRRSLETELFYKLAHTLPLPRRVSADLDKAAIMR
VTLSFLRMHHLRSGDTSEERVTDGDEDTVDGFYPRALAGFIMVMTEEGDMIYLGDSVSKH
LGIPQLELLGQSVYDFVHPCDQEELRDLLAPRPGVSKKKPAQQHTEMNFFLRMKSTLTSR
GRTVNIKSATWKVLHCTGHMRVCCSGEDSSPPAGSFMTVLCEPIPHPSSVEFPLDRSTFL
TRHSMDLRFTHCDGRVSELVGYEPEDLIGKSAYKFHHALDSDHVTKSLHILLSKGQVCTS
LYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQTGCGLKS
DPVSEASEETLCDSDSSSSVELSLQLKENPEDLLQLAPVSGDPIVPLTDFAELSFSLPSS
PDSAPDFPQELCTPELWTLLSPIFSKLTSSPAPALIPIEELPIEDEVEKLFAVCPDESVQ
NKNQPEDVEVVDLDMLAPYISMDDDFLLSVQLPETPDSPSPEPPTATRKRSHEQDEDMPS
QLMSQDKRPRHLVSPIEHKLPLSYALLDCLEDADNPELELGPIPHRRSQLLTDRDPILGE
AQGLCDTAALMRDLFLSRPPDPLTSSLT
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaaagaaaagcctgttggaaaacggtcgagtacggctcagcggaaggtgcgt
tcccgggatgcggcgcgctgcaggcggagtctggagacagagctgttctacaagttggcc
cacaccctgcccctcccccgcagagtctccgccgacctggacaaggccgccatcatgagg
gtgacgctcagcttccttcgcatgcaccacctccgctcaggggatacgagcgaggagcgc
gtcaccgatggagacgaggacacggtggatgggttctacccccgggcgttggcaggcttc
atcatggtgatgaccgaggagggggatatgatttacctgggtgacagcgtcagcaaacac
ctgggcatcccacagttggagttgctgggtcagagtgtgtatgactttgtccacccatgt
gaccaagaggagctacgggatctcctggctcctaggccaggtgtgtccaagaagaaacca
gcgcagcaacacacagagatgaacttcttccttaggatgaagagcactctgactagtaga
ggccgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccacatg
cgtgtgtgctgcagtggcgaggattcgtcacctcctgcaggaagcttcatgacagtgctg
tgtgagcccatcccccacccgtctagtgtggagttccccctggaccggagcaccttcctc
actcgacacagcatggacctgcgcttcacacactgcgatggcagggtgtcagagctagtg
ggatacgagccagaagatctgattggcaaatctgcctacaaattccatcatgccctggac
tcggatcatgtgaccaagagcctgcacatccttctgtccaaaggccaggtgtgcaccagt
ctataccgtttcttggctaagagtgggggcttcgtgtgggcagagacccaggctacagtc
atctacaacaacaagacctctcaaccagaggctgtggtctgtcttaactttatcctcagt
gtggtggagcaggcagatgtggtgttctcagtagagcagactggctgtgggctgaagagt
gatcctgtctctgaggcctccgaggagaccttgtgtgacagtgacagcagcagcagtgta
gagctttccctccagctgaaggagaacccagaggacctcctccaactggcccctgtctca
ggagaccccatcgtacccctcacagactttgcggagctgtcgttcagtcttccatcaagc
cctgactccgccccagatttccctcaggaactgtgcacccctgagctgtggacgctcctc
tcacccatattcagcaagctcacctcatcaccagcaccagcgctgatccccattgaggag
ctgccaatagaggacgaggtggagaagttgtttgccgtctgtccagatgagagtgtgcag
aataaaaaccagcctgaggacgtggaagtggttgatctggacatgctggctccgtatatc
tccatggatgatgatttcctgctcagcgtccagctccctgagacccctgacagcccctcc
ccagagccccccactgctaccaggaaacggagtcatgagcaggatgaagacatgccctcc
cagttgatgagtcaggacaagagaccgagacacttggtgtcccccatcgagcacaaactg
cctctcagctacgccctgctggactgcctggaggatgcagacaacccagagttggagctg
gggccaatcccccacaggcggagccaactgctgacggacagagaccccatcctcggtgaa
gcccagggactatgtgacactgcagccttgatgagggacctcttcttgtcccgcccacct
gaccccctgacctcctctctgacttga
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