Salmo trutta (river trout): 115163410
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Entry
115163410 CDS
T08542
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115163410
03036 Chromosome and associated proteins [BR:
stru03036
]
115163410
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115163410
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
115163410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
Spt6_S1
S1
S1_RRP5
HHH_3
HHH_9
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
115163410
NCBI-ProteinID:
XP_029571104
Ensembl:
ENSSTUG00000048181
LinkDB
All DBs
Position
26:21407465..21448792
Genome browser
AA seq
1739 aa
AA seq
DB search
MDFIEREAEESEEEFGSPEDTEKKALKHAAANDDEEEEEENTEDQDADGNLCGLIDDGVE
EGEEEDEEEGNKDKEGDSDSGEEIGHRKRKRSFDDRLDDDDIDLIEENLGVKVKRQKFRR
LRDMSDDEDEEGDEDVREAHEKDMIADEIFMGTGADEGEALDVPLHPGEDEEEDDEESDI
DDFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGGDFDFAEFDTEAYEDAEEEEEDA
DEESWDRPKKQAKKRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSTRVKP
AEDDELEQEAEWIYRNAFSTLTISMQENADYLDRGPTTTFSRKGPSTIQKIKEALNFMRN
QHFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWTQLKTRKQNLRRLFQKMQGYQFEQI
SADPDKPLADGIRPLDTSDLERLKDVQSSDELGDVYNHFLLYYGRDIPKMQNAARSSKKK
LKKIKVDEDGNEQEVEEEEEEEEEQSKGPDLKLASRRDMYSICQCAGLDGLAKKFGLTPE
QFGENLRDSYQRHETEQFPAEPMELAKDYICSQFSTAEAVLEGTRYMVAMQIAREPLVRH
VLRQTFQERAKINIKPTKKGKKDVDEAHYGYSFKYLKNKPVKELNGDQFLKMFQAEEEGL
LTINICIDLIGVKGYGGDQAYYEEIKQFYYRDEFSHQVQEWNRQRTLAIERSLKQFLYPQ
MAKELKNKLIAEAKENIIKACSRKLYNWLKVAPYRPDQQVEEEDEELMSEAHGKGIRVLG
VAFSSSRDTPVFCALVNGDGEVGDFLRLPYFLKRRNAWREDEREKKIHDIETLKKFLNSK
KPHIIAIAGENRDAQMVIEDIKRTASELEQESSFPTIGVELVDNELAMLYMNSKKSEADF
RDYPPLLRQAVSVARKIQDPLVEYAQVCSSDEDILCLKLHPLQEHVVKEDLLNALYCEFI
NRVNEVGVDVNRAMAHPYTQSLVQYVCGLGPRKGSHLLRILKQNNTRLENRTQLVTMCHM
GPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDA
NPAGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRSTYRG
PNTEEIFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQ
DNFPELSEVWNHFDSGSCPGQAIGVRCRMDNGVTGFIPTKFLSDKVVKHPEERVKVGMTV
HCRIMKIDIEKLSVDLTCRTSDLSDKNNEWKLPKDTYYDFDTETEDVKQEEEAKKKQQRT
TYIKRVIAHPSFHNINFKQAEKMMESMDQGDVIIRPSSKGENHLTVTWKVADCIYQHIDV
REEGKENAFSLGHTLWINTEEFEDLDEITARYVQPMAAFARDLLGHKYFQECNGGDRKKM
EEVLVKSKKEKPTFIPYYVSACRELPGKFLLGYQPRGKPRVEFVTVTPEGFRYRGQIFPT
VNGLFRWFKDHFQEPVAGITPSSSSRTRTPASVNATPANINIADLTRAVNALPQNMTSQM
FSAIAAVTGQGQNPNTTPAGWASSQYGYTGGSSGGGGSSSAYHVFATPAQQPIATPLLTP
SYSYTTPTPSQQQTITTPQYPSNTPQSSHGSHGHGHRPSSSTPSSTSSSRHHRTPTPKAT
SHTAVDWGKMAEQWLQEKEAERKKTRPRMTPRPSPSPMIESTPMSLAGDATPLLDEMDR
NT seq
5220 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatcgagagggaagcagaggagtctgaggaggaatttgggagtccagaggac
acagagaaaaaggcactgaagcatgctgcagcaaatgatgatgaggaggaggaagaggag
aatacagaggatcaagatgcggatggaaacctctgtggtctgattgatgatggtgtggag
gaaggggaggaagaggatgaggaagaagggaataaagataaagaaggtgatagtgactct
ggggaggaaattggacaccgtaagaggaagagaagctttgacgaccgcttggatgatgat
gatattgatctcattgaggagaatttgggagtaaaagtgaaaaggcaaaagttccgtcgt
ttgcgagacatgtcggacgatgaggatgaggagggagatgaagatgttagggaggcccat
gagaaggacatgatagcggatgagatcttcatggggacgggagcggatgagggcgaggca
ttggatgtgcctttgcatcccggggaggatgaggaggaggacgatgaagagtctgatatt
gatgactttattgtggatgatgacggacagcccttgaaaaaacccaagtggaggaagaag
ctgccaggatatacagatgcagcccttcaggaggcccaagagatattcggaggggacttt
gactttgccgagtttgacactgaagcctatgaagatgcagaggaggaggaggaggatgca
gatgaagagtcatgggaccggcccaagaagcaggccaagaagagggtgggtcgacgcagt
atctttgagatctatgagcctagcgagctggagagcagtcacatgacggaccaagacaac
gagatccgctccactgacatgccagagaggttccagttacgctccactcgtgtgaagcca
gcagaggatgatgagctggaacaggaggctgagtggatctataggaatgccttctctact
ctcaccatctccatgcaggagaacgcagactatttggacagaggtccaaccactactttc
agcagaaaaggccccagcaccatccagaagattaaagaggctttgaatttcatgagaaac
caacactttgaggttccgtttatagcgttctacaggaaagagtatgtggagcctgaactc
aatatcaatgatctgtggaaggtttggcagtgggatgagaagtggacccagctgaaaacc
cgcaaacagaacctgagacgcctgttccagaagatgcagggataccagtttgaacagatc
tcagctgacccagataagccactggctgatggcattcgaccactagacacttcagattta
gagaggctgaaggatgtccagtctagtgatgaactgggcgacgtctacaaccatttcctg
ctgtactatggccgggatattccaaagatgcagaatgcagccaggtccagcaagaaaaag
ctgaagaagatcaaagtggatgaagatggtaatgagcaggaagtagaggaggaggaagag
gaagaagaggagcagtcaaaggggccggacctgaagcttgcatctcgcagggatatgtac
agcatctgccagtgtgcaggactggatggcctggccaagaagtttggtctgactccagag
cagtttggagaaaacctacgtgacagttaccagcgtcacgagacggagcagtttcctgct
gagcccatggagctggctaaggactacatctgcagccagttcagcacagcggaggcagta
ctggaggggactcgctacatggttgccatgcagatcgcccgagagcctctagtcagacat
gtgctccgacagacgttccaggaaagagccaagatcaacatcaaacccaccaagaaggga
aagaaggatgtggatgaggcccattatggttactcctttaagtatctgaaaaacaagcct
gtaaaggagctgaatggagaccagttcctcaagatgttccaggcagaggaagagggcctg
ctcaccataaacatctgtattgacctgattggagtgaaggggtacggaggtgaccaggcg
tactatgaagagataaagcagttttactacagagatgagttcagccaccaggttcaggag
tggaacagacagcgcactctggccattgaacgatccctcaaacagttcctttacccgcag
atggcaaaagagctgaagaacaaacttattgcagaagcaaaggagaacatcatcaaggcc
tgcagcaggaagctgtataactggctgaaggtggcgccctatcggcccgaccaacaagtg
gaggaggaggatgaggagctcatgtctgaggcccacggcaaagggatccgcgtgctggga
gtggccttctcatccagcagagacaccccagtgttctgtgccctggtgaacggtgacgga
gaggtgggggatttcctcaggcttccttacttcctgaagaggaggaacgcatggagggag
gatgaaagggagaaaaagatccacgatattgaaaccctgaagaagtttctgaacagcaag
aagcctcacatcatcgctatagctggggagaacagggacgcccagatggtgattgaggac
attaaacgcactgccagtgagctggagcaggagtcctccttccccaccatcggggtggag
ctggttgacaatgaactggccatgctctacatgaacagcaagaagtcagaggcagatttc
cgggactacccccctctcctgagacaggctgtgtctgtggccaggaagatccaggacccc
ctggtggagtatgctcaggtgtgcagcagtgacgaagacatcctctgcctcaagttacac
cctttgcaggagcatgtagtgaaggaggacctgctgaatgctctgtactgtgagttcatc
aaccgggtgaatgaagtgggtgtggatgtgaaccgggccatggcccacccctacacccag
agcctggtgcagtacgtctgtggcctggggcccaggaagggatcccacctgctcaggatc
ctgaagcaaaataacactcgtctggaaaaccgcactcagctggtcaccatgtgtcacatg
ggccccaaggtcttcatcaactgtgctggtttcatcaagattgacacagcttcacttgga
gacagtactgactcctatattgaggttctggacgggtcgcgggtgcacccagagacctac
gagtgggccaggaagatggccgtggatgccctggagtacgatgagtcagcggaggatgcc
aacccggccggagcactggaggagatcctggaaaacccggagcggctcaaagacttagac
ttggacgcctttgctgaggaactggaaagacagggctatggtaacaagggcatcaccctg
tatgacatccgtgctgagctgagctgccggtacaaagacctgaggtccacctacagagga
cctaacacagaggagatcttcaacctgctcaccaaggagacaccagagaccttttacatc
ggtaaactgatcaccagtgtggtgacaggcattgctcaccggcgcccccagggggagagt
tatgaccaggccataaggaatgatgagacaggtctgtggcagtgtcctttctgtcagcag
gataacttccctgagctcagcgaggtgtggaatcattttgacagtggctcctgccctggc
caagctattggggtccgctgtcgcatggacaacggagtcactggctttatccctaccaag
ttcctcagtgacaaagtggtcaagcatcctgaagaaagggttaaggtgggcatgacagtg
cactgcaggatcatgaagattgacattgagaagctcagtgtggatctgacctgtcggacg
tcagacctgtcggataagaacaatgagtggaagcttcccaaggacacctactacgacttt
gacactgagacagaggatgtgaagcaggaggaggaggccaagaagaaacagcagagaaca
acctacatcaagagggtgatagcccacccatcgttccataacatcaacttcaagcaggca
gagaagatgatggagtccatggaccagggagatgtgatcatcaggcccagcagtaaagga
gagaaccacctgactgttacttggaaggttgctgattgcatctaccagcacattgacgta
cgagaggagggcaaggagaacgccttcagcctgggacataccctgtggatcaacactgag
gaatttgaagatctggatgaaatcacagccagatacgttcaaccaatggctgcgtttgct
cgcgatctacttggtcacaagtattttcaagaatgcaatggtggagaccgaaagaaaatg
gaggaggtattggtgaaaagcaagaaggaaaagcctacattcatcccctactatgtgtct
gcctgtagagagctgccagggaagtttctgctcggttaccagccccgcggaaaaccaagg
gttgagtttgtgactgtcacgcctgaggggttcagatacagaggccagatttttcccaca
gtcaatggactcttccgctggttcaaagaccatttccaggagccagtggcaggaattact
cccagcagcagcagtagaacacgaaccccggcctctgtcaatgccacgccagccaatatt
aacattgcagatctgactcgtgcagtgaacgccctccctcagaacatgacctctcagatg
ttcagtgccattgccgcggtaacgggccagggccagaaccccaacaccacacctgccgga
tgggcatccagccagtacggctatactggtggcagcagcggtggaggggggagcagcagc
gcctatcatgtgtttgccacaccagctcagcagcccattgctactccccttctgacgccc
agctattcatacaccacccccacccctagccagcagcagactatcaccacgccccagtac
cccagcaacactccccagtcctcacacggatcacacggacatggacaccgcccttcctcc
tccacaccatcatcaacatcctcctcccgccaccacaggacaccaacaccaaaggcaact
tcccacacagcggtggactggggaaagatggccgagcagtggctccaggagaaagaggca
gagcgcaagaagacgaggcccagaatgaccccacgaccttctcccagccccatgatcgag
agcacgcccatgtccctcgctggagacgccacaccactgctggatgagatggatcgctag
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integrated database retrieval system
