Salmo trutta (river trout): 115163518
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Entry
115163518 CDS
T08542
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
stru
Salmo trutta (river trout)
Pathway
stru04142
Lysosome
stru04144
Endocytosis
stru05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115163518
04142 Lysosome
115163518
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
115163518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115163518
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stru04147
]
115163518
Membrane trafficking [BR:
stru04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
115163518
Exosome [BR:
stru04147
]
Exosomal proteins
Proteins found in most exosomes
115163518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
115163518
NCBI-ProteinID:
XP_029571354
Ensembl:
ENSSTUG00000045480
LinkDB
All DBs
Position
26:complement(25013684..25039371)
Genome browser
AA seq
1687 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENTF
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VGQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDERMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGNEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAILTMM
SHPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFF
MKTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDVELAEELLAWFLE
EDKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDK
LDASESLRKQEEQNTESQPIVYGTPQLMLTSGPGQAVPPQPGYGGYGYPAAPTGYGQPPQ
PGFGYGM
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatactacctattcgcttccaggagcacctgcagctccagaacctggggatc
aacccagctaacattggattcagcaccctgactatggagtctgataagttcatctgtata
agagagaaggtgggcgagcaggcacaggttgtcatcattgatatggccgaccccaacact
cccatccgtaggcccatctctgcagatagcgccatcatgaaccctgctagcaaagttatt
gccctcaaagacgcggcaaaaactctccagattttcaacattgagatgaagagcaagatg
aaggctcacaccatgactgatgacgtcactttctggaagtggatctccctcaacactgta
gcactggtcacagacaacgccgtctaccattggagcatggagggagactcccagccagtc
aaagtctttgacagacactccagcctagcaggctgtcaaattatcaactaccgcactgac
gccaaacagaaatggctgcttctcattgggatttcagcacagcaaaaccgtgtggtggga
gccatgcagctgtactctgtggacaggaaggtgtcccagcccattgagggccacgccgcc
ggcttcgcccagttcaaaatggagggtaacacagaggaatcgacactgttctgcttcgct
gtccgagggcaagctggaggaaagttacacataattgaagtgggaaccccaccaacaggc
aatcagccatttccaaagaaggcagtggacgtgttcttccctcctgaggcccagaatgac
ttccctgttgccatgcagatcagctctaagcaagatgttgtctttctcatcaccaaatat
ggctacatccacctgtatgacctcgagactggcacctgtatctacatgaaccggatcagc
ggggagaccatctttgttacagccccacatgaaccaaccgctggcatcattggagtcaac
aggaaaggacaggtgttgtcagtgtgtgtggaggaggagaacatcatcccctacatcacc
aacgtgctccagaacccagacctggccctgcgcatggccgtgcgcaacaacctggccggg
gccgaggagctgttcgccagaaagttcaacaccctgttcgctgcagggaactactctgag
gctgccaaggtggccgccaatgctcccaagggtatcctgcgtaccccggacaccatccgt
aagttccagagtgtgccggcccagccgggccagacctctccactgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtc
ctacagcagggacgcaagcagctgctggagaaatggctcaaagaggacaagctggagtgt
tcagaggagctgggggacctggtgaagtcagtggaccccactctggccctcagcgtctac
ctcagggccaacgtgcccaacaaggtcattcagtgcttcgctgagaccggacagttccag
aaaattgtcctctacgccaaaaaggtgggctacactccagactggatgttcctgctaagg
aatgtgatgaggatcagtccagaacaaggcctgcagttctcccagatgctggtgcaggac
gaggagccactggccgacatcacacagatcgttgacgtgtttatggagtataacctgatc
cagcagtgtacctccttcctcctggacgccctgaagaacaacaggcctgctgaggggcct
ctgcagacacgcctgctggagatgaatctggtccacgctccacaggtggccgatgccatc
ctgggcaaccagatgttcacccactacgaccgtgcccacgttgcccagctgtgtgagaaa
gctggcctgctgcagagggctctggagcattacaccgacctgtacgatatcaaacgggct
gtggtgcacacacacctgctcaaccctgagtggctggtgaacttctttggctccctgtca
gtggaggactctctagagtgtcttcgggccatgctgtctgccaacatccgtcagaacctg
cagatctgtgtccaggtggcctctaagtaccacgagcagctctccaccaactctctcact
gagctctttgagtccttcaagagcttcgaaggtctgttctacttcctgggttccatcgtt
aatttcagccaggacccagaggtccacttcaagtacatccaggccgcctgtaagacggga
cagatcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtc
aagaacttcctcaaggaagctaagctgactgaccagctccccctgatcatcgtgtgtgac
cgctttgactttgtccacgacctggtcctctacctgtaccgcaacaccctgcagaaatac
attgagatctatgtgcagaaggtgaaccccagccgtctgccggtggtgattggagggctg
ctggatgtggactgtgctgaggatgtgattaagaacctgatcctggtggtgaaaggacag
ttctccactgatgaactggtggctgaggtggagaagaggaacagactgaagctgctcctg
ccttggctggaggcccgtatccatgagggctgtgaggagccagctacccacaatgccctg
gccaagatctacatcgacagcaacaacaacccagagcgcttcctgcgtgagaacactttc
tacgacagccgtgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtg
gcctacgagagaggacagtgtgaccaggagctcattaatgtgtgcaatgagaactctctg
ttcaagagcctgtctcgctacctggttcgccgtaaagaccctgagctgtgggccagcgtg
ctgctggagagtaacccgttcagaagacccctcatcgaccaagttgttcagacggccctg
tctgagacacaggacccagaggaggtgtcagtcacagtcaaggccttcatgactgcagac
ctccccaacgaactcattgagctgctggagaagatcgttctggataactcggtcttcagt
gaacacagaaacctgcagaacctgctgatcctgacagccatcaaggcggaccggacccgt
gtgatggagtacatcaaccgcctagacaactacgacgcccccgacatcgctaacatcgcc
atcagtaacgagctcttcgaggaggccttcgccatcttcaggaagtttgacgtcaacaca
tccgccgtgcaggttctgattgagcacattgggaacctggaccgggcctacgaatttgct
gagcgctgcaacgagcctccggtgtggagccagctggccaaggctcagctgcagaagggt
ctggtgaaggaggccatcgactcctacatcaaggctgatgacccctctgcctacatggag
gtgggccaggctgcagcccagagtggtaactgggaggacctggtgaagttccttcagatg
gcccgtaagaagtcccgtgagtcctacgtggagacagagctcatcttcgccctggccaag
accaaccgcctggctgagctggaggagttcatcaatggacccaacaatgcccacatccaa
caggtgggtgacaggtgttatgatgagaggatgtatgatgcggccaagctgctctacaac
aacgtgtccaatttcgggcggctagcgtccaccctggtccacctgggagagtaccaggcc
gccgtggatggagcccgcaaagccaacagcacccgcacctggaaagaggtgtgctttgcc
tgtgtggatggaaacgagttccgcctggcccagatgtgtggcctgcacatcgttgtccat
gctgatgaactggaggagctcatcaactactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctgggtctggagcgggctcacatgggcatgttcaccgag
ctggccatcctctactccaagttcaaaccccagaagatgagggagcacctggagctcttc
tggtccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggcg
gagctggtcttcctctatgacaagtatgaggagtttgacaacgccatcctcaccatgatg
agccacccctcagacgcctggaaggagggacagttcaaagacattgtcaccaaggtggcc
aatgtggagttatactacaaggctatccagttctacctggagttcaaaccattgttactg
aacgacctgctcatagtgctgtcaccacgactcgatcacacccgcgcagtcaacttcttc
atgaagaccaagcagctgtcactggtcaagccgtacctgcggtcagtgcagaaccacaac
aacaagggtgtcaatgaagcacttaacaacctcttcatcacagaggaagactatgcggcc
ctgcgtgcctccatcgatgcctacgacaactttgacaacatcacccttgcccagggcctg
gagaagcacgagctgattgagttcaggaggatcgctgcctacctcttcaaaggcaataac
cgctggaagcagagcgtggaactctgcaagaaggacaaactctacaaggacgccatgcag
tatgcgtctgagtcgaaagacgtggagctggctgaggagttgttggcctggttcctggag
gaggataagaaggagtgctttgccgcctgcctcttcacctgctatgacctgctgaggcct
gacgtagtgctggagacggcctggaggcacaacatcatggacttctccatgccctatttc
atccaggtcatgagggagtacctctccaaggttgatgcgattaaggaaaaggtcgacaag
cttgacgcctccgagtccctgaggaaacaggaggagcagaacacagagtcccagcccatt
gtttatggcacgccccagctcatgctcacttcaggccctggtcaggctgtgcccccccag
cctggctatggaggctacggctacccagcagcacccaccggctacggccagcctccccag
cctggctttggctatggcatgtga
DBGET
integrated database retrieval system
