Salmo trutta (river trout): 115164404
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Entry
115164404 CDS
T08542
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115164404 (thoc5)
09122 Translation
03013 Nucleocytoplasmic transport
115164404 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115164404 (thoc5)
03041 Spliceosome [BR:
stru03041
]
115164404 (thoc5)
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
115164404 (thoc5)
Spliceosome [BR:
stru03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115164404 (thoc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
115164404
NCBI-ProteinID:
XP_029572703
LinkDB
All DBs
Position
27:complement(15283578..15304197)
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AA seq
683 aa
AA seq
DB search
MSDALKKRKSKVLRSETGTPEGKCGREEGDQDIRVYSEEVELDGRDPEEDYQQYKLTCEA
LAKLMNDIQELKANGAKDGCAEVEEKRMQSCIHFMSLKKLNRLAHMRLKRGRDQTHEGKQ
RVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSVDEFYQEAPPEISRTPLTKD
DPHQLTLARLDWELEQRKRLAEQYKESLSSKEKIQKGIEVKKEHLSSLQPGLNAIMQASL
PVQEYLSMPFEQTQRQTEIARHLPPSLYVLLVQASAYGQACDKSLSVSISGDVDEAKALS
KPPEDSQDDDSGDSDAEEEQEKTKRRRPTTGGQLDDKRREMLKRHPLSLCLDLKCKDGSV
LHLFNYYLMNLNIMTVKAKVSTATDLTGAISAGELLNSDTLLNCLYANDQGRETPNPANR
YQFDKVGISSFGDYVAELGHPYLWVQSLGGLQFPSDAPEGLRAGSSLSASHMESTMKLLR
GRVQSRLALHKQFSSLEHSIVPVSTECQHLFPAKVLSRLARWTTMSHQEYTNLSFTQHVS
DAGLARETDLFFMAVVERGTARLQAAVVLNPRYPEISPLFALSLSWKGECSGRTDDNLRA
MESEVNVFKSELQGPRPGHQLLTNQVARLCVCLDVYLETDGQDDSVEGPREFLREKMCLR
TVRGPNRLKPFKYNHPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgccctgaagaagcgcaagtcgaaagtgctccgcagcgagacgggcacaccg
gaggggaaatgcggccgcgaagagggagaccaggacatacgtgtgtacagtgaggaggtg
gagctggatggcagggaccctgaagaggactaccagcagtataaactgacctgtgaagct
ctggccaaactgatgaacgacatacaggagctgaaagccaacggagccaaggatgggtgt
gctgaggtagaggagaagaggatgcagagctgtatccactttatgagcctgaagaaactc
aaccgcctggctcacatgagactgaagagggggagagaccagacacacgagggcaagcag
agagtggatgtgttgcacctgcagctccagaacctgctctatgaggtcatgcacctgcag
aaggagatcagcaagtgtctggagttcaagtctaaacatgaggagatagatctggtgagt
gtagatgagttctaccaggaggccccccctgagatctcccgcaccccactcaccaaggat
gacccccaccaactcacactggccaggttggactgggaactggagcagaggaagaggctg
gctgagcagtacaaggagtctctgtccagtaaggagaagatccagaaaggcattgaggtg
aagaaggaacacctgagttctctacagcctggactcaacgctatcatgcaggcatccctc
ccggtccaggagtacctctcaatgccgtttgaacagacccagagacagacagagatcgcc
cgccaccttcccccctctctctacgtcctcctggtacaggccagcgcttacggacaggcc
tgcgataagagcctgagtgtgtccatcagtggagacgtggacgaggccaaagctctgtct
aaacctccagaggactcccaggatgatgattctggtgattctgatgcagaggaggagcag
gagaagacgaagaggaggcgacctactacaggtggtcagctggatgataagagacgtgag
atgctgaagagacaccctctctccctttgcctggacctcaaatgcaaagacggcagtgtg
ctgcatctgttcaactactacctgatgaacctgaacatcatgactgtcaaggccaaagtc
tccaccgccacagatctcactggagccatcagcgcaggggagctgttaaattctgacacg
ctgctcaactgcctgtatgccaatgaccagggccgcgagacccccaaccctgctaaccgc
taccagtttgataaagtggggattagttcgtttggagactacgtggcagagttaggtcat
ccctacctgtgggtgcagagtctaggaggactgcagttccccagtgacgccccagagggt
ttgcgtgcaggcagttctcttagtgccagtcacatggagagcaccatgaagctgctgaga
ggacgagtccagtcacgtctggccctgcacaaacagttttcctcactagaacacagtatc
gttccagtgtccacggagtgccagcacctgttccctgctaaggttctctcccgcctggct
cgctggacaaccatgtcacatcaggagtacacaaatctgtcgttcacgcagcatgtgtca
gacgcaggtctggctcgggaaactgacctgttcttcatggctgtggtggagagaggaaca
gctcgtcttcaggctgcagtggtgttgaacccccgttatccagaaatctctcctctgttt
gctctttcactcagctggaagggcgagtgcagcggacgtaccgatgacaaccttagagcc
atggagagtgaggtgaatgtgtttaagtcggagctccaggggccccgcccagggcaccag
ctgctgaccaatcaggtggctcgtctgtgtgtctgtctggacgtatacctggagaccgac
ggacaggatgacagcgtggagggaccacgggagtttctcagagagaagatgtgtctacgc
accgtaaggggtccgaaccgtctgaagccgttcaagtacaaccacccccagggcttcttc
agtcaccgctga
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