Salmo trutta (river trout): 115164430
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Entry
115164430 CDS
T08542
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3-like isoform X1
KO
K22611
spliceosome associated factor 3, U4/U6 recycling protein
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115164430
03036 Chromosome and associated proteins [BR:
stru03036
]
115164430
Spliceosome [BR:
stru03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
115164430
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
115164430
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
HAT_PRP39_N
LSM_int_assoc
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
RRM_occluded
HAT_Syf1_M
RRM_11
Lsm_interact
Motif
Other DBs
NCBI-GeneID:
115164430
NCBI-ProteinID:
XP_029572744
Ensembl:
ENSSTUG00000050917
LinkDB
All DBs
Position
27:15849742..15864389
Genome browser
AA seq
958 aa
AA seq
DB search
MAATGDAEETQLQEMEEEARMENEMDSDEEEGLGIENSDDEIDDSSEDEKENEAEIQRLE
EQLSINAFDYNCHVDLIKLLRQEGELPRLRKARQKMSELFPLTEEIWLDWLKDEIHLTEE
EAIREKVYELFEMAVKDYICPEIWLEYAQYSIGGMGLPGGMEKVRSIFERALTAVGLHMT
KGATVWEAYREFENAILATVQPPPGSVPTREQQELLNAQLERIHTLFRRQLSIPLMDMDG
TYAEYEEWSDQGVSDTVSQKYKGALKQMEKSKPYEETLMIAEPPKLAEYQTYIDYEQKEG
DPARIQIIFERALSENCLVPDMWAKYTKYLDRQLKIKDLVLSSHDRAVRNCPWTMGLWKN
YLLALERHGADHHTISDVFEKALNAGFIQATDYVNIWEAYLDYLRRRVDFSKGESTLTLE
SSRELEELRAAFTRSLDYMKQDVEERFSESGDPSCTIMQVWAKIEALHCKNMQKARELWD
SIMTKGNAKFANMWLEYYNLERSYGDALHCRKALHRAVQCTSDYPEHVCEVLLTFERVEG
SLEDWDAAVQKTETRLNRVNEQRSKVTAKEAHVARQEEEKTEQRRRAKADKKNQKKGQKG
SRPGDKRKAEDKDYEDEWGEESEQPPKRHRGESDQAFRGGGGGAEEFMGTESGLFGRRAP
PGRRQEPPGGKRGQQVAPATVWKTQEDDPELRKDDCSVFISNLAFTMDDPEKRLKKLFEP
CGPVQSVRPVYAAKGFRGYCYVQFEGKASVLEALKMDRREVEGRPMFVSPCVDKNKNPDF
KVFKYNTNLEKHKIFISGLPFSCTKEQLEELCKDNGTVKDIRLVTNRSGKPKGLAYVEFG
DEAQASQAVLKLDGTVLQEHTLSVAISNPPRRNTADKPGFSRPVGAMMPRSMVYGSRGKG
RTQLSLLPRSLHRQTGSESKAENGTAPKPTGGESGDAGNEAQAKPLSNSDFAKMLFKK
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaacgggggacgcagaggagactcagttgcaagagatggaggaagaggcaagg
atggaaaatgaaatggattcagatgaagaggagggtttgggaattgaaaattccgacgat
gaaatagacgattcatcagaagacgaaaaagagaatgaagccgaaattcagcgtttggag
gagcagctgtccatcaatgcttttgattacaactgtcatgtggacctcataaaactcctg
aggcaggagggggagctgcctcggctgcgtaaggcaaggcagaagatgagtgagctcttc
ccactcactgaagagatttggctggactggctcaaggatgagatccacctaacagaagag
gaggcgatccgggagaaagtctatgagctctttgagatggctgtgaaagattatatctgc
cctgaaatctggctggaatatgcccaatactctatcgggggcatgggactgcctggtggg
atggagaaggtgaggtccatcttcgagagagccctgacagccgtggggctgcacatgacc
aagggggcgactgtgtgggaggcctacagggagtttgagaatgccatactggcaactgtt
cagccgccccctggcagcgttcccacccgtgagcagcaggagcttctgaacgctcaactc
gagcgcatccacactctgttccgccgccagctgtccatccccttaatggacatggatgga
acatatgcagagtatgaggagtggtctgaccagggggtgtctgatacagtctcccagaag
tacaagggggccctgaaacagatggagaagagcaagccttatgaggagactctgatgata
gccgagccgcccaagctggcagagtatcagacctacattgactatgagcaaaaggagggt
gacccagcacggatccaaatcatctttgagcgggcattgtcagaaaactgcctggtacca
gacatgtgggcaaagtacaccaaatacctggaccgccaactgaagatcaaagacctggtc
ctgtcctctcacgaccgtgcggtcaggaactgcccctggaccatgggcctgtggaagaac
tacctgctggccctggagaggcatggggccgaccaccacactatctcagatgtttttgaa
aaggccctgaatgctggtttcatacaagccacagattacgtgaatatctgggaagcgtac
ctcgattacctgaggcggcgcgtcgatttcagcaaaggtgaaagcaccttaacattggag
tcgagcagagagctggaggagctgcgggcagccttcacccggtctctggactatatgaaa
caggatgtggaagagaggtttagtgaaagtggagacccctcttgtactatcatgcaggtc
tgggcaaagatagaggccttgcattgtaagaacatgcagaaggccagagaactgtgggac
agcatcatgacaaaagggaacgccaaattcgccaacatgtggttggagtactataacctg
gagaggtcgtacggagacgctctccactgcaggaaagccctccacagggcagtccagtgt
acctccgactacccagagcatgtgtgcgaggtcctgctcacctttgagagggttgagggt
tctctggaggactgggatgcagcggtgcagaagactgagacacggctgaacagagtcaat
gagcagaggtccaaggtgacagcgaaagaggcccatgtggctcgacaggaggaggagaag
actgaacagcggcggagggccaaggcagacaagaagaaccagaagaagggccagaaaggc
agcaggcctggggacaagaggaaggcagaggacaaggattacgaggatgagtggggagag
gaatcggagcaacctccaaagaggcacagaggggagagcgaccaagccttcaggggggga
ggcggtggtgctgaggagttcatggggacagagagtgggctgtttgggaggagagccccc
cctggccgcagacaggaaccccctggtggtaagaggggccagcaggtggcaccagccacc
gtatggaagacccaggaagatgaccctgagctacgcaaggatgactgtagtgtgtttatc
agtaacctggccttcaccatggacgatccagagaagaggctaaagaagttgtttgagccc
tgtggtcctgtccagtcggtgcgccccgtctatgctgccaagggcttcagagggtactgc
tacgtacagtttgagggcaaggcgtctgtgctcgaggccctgaagatggaccggcgagag
gtggaaggcaggcccatgttcgtatcaccctgtgtggataaaaacaagaaccctgatttt
aaggtgtttaagtacaacacaaacctagagaaacacaagatcttcatctcgggcctgccc
ttttcctgcaccaaggagcaactagaggagctgtgcaaggataatggcaccgttaaagac
atccgcttggtcaccaaccgctcaggcaaacccaagggtctggcgtacgtggagtttggg
gatgaggctcaggcctcccaggccgtgctgaagttggatggcacagtactacaggaacac
acactctctgttgccattagcaacccgcctcgcagaaacactgccgacaagcctggcttc
agcagacccgtgggagccatgatgccccggtctatggtctatggatcgaggggaaaaggg
cgcacccagctctcactactccctcgttcactacatcggcagactggatcagaaagtaaa
gcagagaatgggactgcacctaaacccacagggggcgaatctggagatgctgggaatgaa
gcacaagccaagcccttgtctaattcagactttgccaaaatgcttttcaaaaagtga
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