Salmo trutta (river trout): 115164575
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Entry
115164575 CDS
T08542
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115164575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115164575
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115164575
Spliceosome [BR:
stru03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
115164575
Complex C
U5 SnRNP specific factors
115164575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
DUF603
Cache_WalK
Motif
Other DBs
NCBI-GeneID:
115164575
NCBI-ProteinID:
XP_029573069
Ensembl:
ENSSTUG00000024387
LinkDB
All DBs
Position
27:complement(20945056..20961371)
Genome browser
AA seq
2137 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLVGTKMGDKSQRTK
PSMLEERRAKRRKRDEDRHDMNKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDDGSDEESEGEEADLGCTL
TANLGVTGDVMTAKKKELHPRDIDAFWLQRQLSRFYDDAIISQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKEKIIGKMETDPDLSKVL
YQLQETEKEDIIREERSRRERVRKSRVDNDLESMDIDHGESMTPKQLLDLEDLAFTQGSH
FMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVTIEKLPKYAQAGFEGFKTL
NRIQSKLFKTAMETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINLDDFKIIYV
APMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQVIVCTPEKWDIITRKGG
ERTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDV
ATCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML
NAEIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLIHTAA
NVLDKNSLVKYDKRTGAFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLS
SEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVE
LTITPDFQWDDKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEP
LPPQYFIRVASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNAAFETLY
QNKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITP
MEALAEQVFVDWHQKFQDALNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQ
RKNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA
HWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVV
FVPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKVTDGTLKETLANGVGYLH
EGLSTTERRIVEQLFNSGAVQVVVASRSLCWGTNISAHLVVIMDTQYYNGKIHAYVDYPI
YDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIR
HHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTSEHIKRCMDKGVES
IFDIMEMEDEDRSGLLQLSDTQIADVARFCNRYPNIELSYEVAEKENIKSGGPVLVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVLGV
HNYTLYFMSDAYMGCDQEYKFSVDVKEADSDGDSDSD
NT seq
6414 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcacgtagcttgcagtatgagtacaaagcgaactccaacttggtc
ttgcaagcggaccgttcgctcattgaccgcacaaggcgtgatgagcccacaggagaggtg
ctgtccctggtggggaagttggtgggaaccaagatgggtgacaagtcccagaggaccaaa
ccttcaatgctggaggagagacgggcaaagaggaggaagagagatgaggacaggcatgac
atgaacaagatgaagggcttcaccctcctgtcagagggcattgatgagatggtgggcatc
gtgtacaagcctaagaccaaggagaccagggagacctatgaggtccttctcagcttcatc
caggctgcgcttggagatcagccgagagatatcctgtgtggagcggctgacgaggtgctg
gctgtgctgaagaatgacaagatgagggacaaggagagacggcgggaagtggagcagtta
ctagggcctgcagatgacacacgctaccacgtgttggtcaacctgggcaagaagatcagt
gactacgggggtgacaaagagctccagaacatggatgacaacattgacgaaacatacgga
gtgaatgtccagtttgaatctgatgaggaggagggtgatgaggaccagtttggggaggtg
cgagatgacggatcagacgaagagagtgaaggagaggaagcagacttgggctgcactctg
acagccaatcttggtgtgacaggtgatgtgatgacagccaagaagaaggagctgcaccct
cgtgacatcgatgccttctggctccaacgtcagctcagccgtttctatgacgatgccata
atctctcagaagaaagcagatgaggttctggagatcctcaagacggccagtgatgaccga
gaatgtgagaaccagctggtcttactgttgggattcaacacctttgacttcatcaaaatc
cttcgtcagcatcgtcgcatgatccagtactgtaccatgttggcaagtgctcagagcgaa
gcagagaaggagaagatcataggaaagatggagacagatccagacttgtccaaagttctt
tatcagctgcaggagactgagaaggaggatattattagggaagagcgatctcgcagggag
agagtaaggaagtctcgcgtggacaatgacttggagtctatggacattgaccatggagag
tccatgacccctaaacagttgctggacctggaggacctggccttcacccagggaagccac
ttcatggccaacaagaggtgccagctgcccgatggctcctttcgcaagcagcgcaaaggc
tacgaggaggtgcacgttcctgcactcaaacccaagcccttcgctgacgatgaggtgctg
gtgaccattgagaagctgcccaagtatgcccaggcaggtttcgaagggttcaaaaccctg
aaccgcattcagagcaagctgttcaagactgctatggagaccgatgagaacctgctggtg
tgtgctcctacgggagcaggtaagaccaacgtggccctcatggctatgctaagagagatc
ggcaagcacatcaatctggacggaaccattaacttggacgacttcaagatcatctatgtg
gctcctatgcgctcgctggtacaggagatggtgggaagctttagtaagcgtctggccagt
tatggcatcacagtgtctgagctgacaggagaccaccagctgtgtaaagaggagatcaat
gccacccaggtcatcgtctgcaccccagagaaatgggacatcatcacacgcaaaggaggc
gagcgcacctatacccagctagtgcgcctcatcatcattgatgagatccatctgctgcat
gacgaccgtgggccagtgctggagtctctggtggccaggaccatccgcaacgtggagctg
acccaggaggacgtgcgtctgctgggtctcagtgccaccctgcccaactacgaggacgtg
gccacctgcctgcgagtagaccccgccaagggactcttctacttcgacaacagtttccgt
ccagtgcccctggaacagacatatgtgggcatcactgagaagaaggctatcaagcgcttc
cagatcatgaatgaaattgtctatgagaagatcatggagcatgctgggaagaaccaggtg
ctggtgtttgtccactccaggaaggagacggggaagacggcccgggctatcagggacatg
tgtctggagaaagacaccctggggctgttcctgagggaggggtcagcctcaactgaggtc
ctcaggactgaggcagagcagtgtaagaaccttgagctgaaggacttgctgccctacggt
tttgccatccatcatgctggtatgaccagagtggaccgtaccttggtggaagatctcttt
gctgatcgccacatccaggtgctggtgtccacagccacattggcctggggtgtgaatctg
cctgcacatactgtcatcatcaaaggcacccaggtgtatagcccagaaaaaggcagatgg
acagagctgggagccctggacattctacagatgcttggtcgagctgggcgtcctcagtac
gacaccaagggagagggcattctgatcacatcccatggggagctgcagtactacctatct
ctgctcaaccagcagctgcccatcgagagccagatggtttccaagttgccagacatgctc
aacgctgagatagtgctgggcaacgtgcagaatgctaaggacgcagtgaactggctgggc
tacacctacctgtacgtgcgcatgctccgtaaccccaccctgtacggagtctcccatgac
gaccgcagctctgaccccctgctggagcgccgcaggatggacctgatccacactgcagcc
aatgtgctggacaagaacagcctggtcaagtacgacaagcggaccggcgctttccaggtg
acggatctgggtcgcatcgccagccacttctacatcacccatgactccatccagacgtac
aaccagctgctgaagcccaccctcagtgagatcgagcttttccgtgtcttctctctctcc
tctgagttcaggaacatcactgtcagagaggaagagaagctggaactgcaaaagctgctg
gagagagttcccattccagtgaaggagagcattgaggagcccagcgccaagatcaacgtg
ctgctccaggcttacatctctcagctcaaactggagggctttgctctgatggctgacatg
gtctacgtgacgcagagtgctggaagactgatgcgagccatctttgagatcgtcctgagc
aggggatgggcccagctcacagacaaaaccatgaacctctgcaagatgattgacaagagg
atgtggcagtccatgtctcctctgcgtcagttcaggaagctcccagaggaagtcatcaag
aagattgagaagaagaacttccccttcgagcgcctctatgaccttaaccacaatgagatt
ggtgagttgatccgcatgcccaagatggggaagaccatccataagtacgtgcaccagttc
cccaaactggacctggccgtccacctgcagcccatcacccgctccacactgaaggtggag
ctcaccatcacaccggacttccagtgggatgacaaggtgcatggctcgtcagaggccttc
tggatcctggtggaggatgtagacagtgaggtcatcctacaccacgagtacttcctgctc
aaggccaagtacgcccaggacgagcacctggtcaccttctttgtgcccgtgttcgagccc
ctgcccccacagtacttcatccgcgtggcctctgaccgctggctgtcctgtgagacccag
ctgccggtgtctttccgccacctgatcctgccagagaagtacccccctcctactgagctg
ctggacttgcagcccctgcctgtgaccgccctgcgtaatgccgccttcgagaccctctat
cagaacaagtttcccttcttcaaccccatccagacacaggtgttcaacgctgtgtacaac
agtgatgacaacgtgtttgtgggagcccccaccggcagtgggaagaccatctgtgctgag
tttgccatcctgaggatgctgctgcacaacgcagagggacgctgtgtctacatcacaccc
atggaggccctggctgaacaggtgtttgttgactggcaccagaagttccaggatgctctg
aataagaaggtggtgttgctgacgggagagactagcactgacctgaagctgctggggaag
ggtgacatcattgtcagcaccccggacaaatgggacatcctgtcacgccgctggaagcag
aggaagaacgtccagaacgtcagcctcttcatcgtggacgagactcacctcattggagga
gagaacgggcctgtgttggaggtgatctgctccaggatgaggtacatctcgtctcagatt
gagcgtcccatccgcatcgtggccctcagctcctccctgtccaacgccaaagacgtggcc
cactggctgggatgcagcaccaccgcaacctttaacttccaccccaacgtcaggcctgtc
cctctggagctgcacatccagggcttcaatgtgagtcacacccagactcgcttgctgtcc
atggccaagccagtataccacgccatcatgaagcactccccctctaaaccggctgtggtg
ttcgtcccatcccgccgacagacccgcctcaccgccatcgacatcctcaccttctgtgct
gctgatgtggtccctcagaggttcctgcactgcactgagaaggacctggctcccttcctg
gagaaggtgacagacggcaccctgaaggagacgctggccaatggggtgggctacctgcac
gagggcctgtccactacagaacgcaggattgtggagcagctcttcaactcgggtgcagtc
caggttgtagtggcctcacgctccctctgctggggcacaaacatatctgctcacctggtt
gttatcatggacacccagtactacaatggcaaaatacatgcctatgtggactaccctatc
tacgatgtgctccagatggtgggcaaggccaaccggcccctgcaggacgatgagggacgc
tgtgtcatcatgtgtcagggttccaaaaaggatttcttcaagaagttcctgtatgagccc
ctgccggtggaatctcacctggaccactgcatgcacgaccacttcaatgctgagatcgtc
accaagacggtggagaacaaacaggacgcagtggactacctgacctggaccttcctgtac
cgccgcatgacccagaaccccaactactataacctgcaaggcatgtctcaccgtcatctg
tccgaccacctgtcagagctggtggagaacaccctgcatgacctggagcagtccaagtgc
atcagcatcgaggatgagatggacgtggcacctcttaacttgggcatgatcgctgcctac
tactatatcaactacaccactatcgagttgttcagtatgtccctgaacgccaagaccaag
atccgtggattgattgagatcatttccaatgctgctgagtacaagaacatccccatcaga
caccatgaggacaacctgctcagacagctggcccagaaggtgccccacaaactgaacaac
cccaagttcaacgacccccatgtgaagaccaacctgctgttgcaggctcacttgtccagg
atgcagttgagcgctgagctccagtcagacacagaggagatcctcagcaaggctgtgcgt
ctgatccaggcctgtgtagatgtgctgtccagtaatggctggctgagccctgcgctggct
gctatggagctggctcagatggtcacccaggccatgtggtccaaggactcctacctcaaa
cagctgccctacttcacctctgagcacatcaaacgctgcatggacaagggtgtggagagt
atctttgacatcatggagatggaggatgaggatcgtagtgggctgctgcagctctcagac
acccagatagctgacgtggctcgcttctgtaaccgctaccctaacattgaactgtcctac
gaggtggcagagaaggagaacatcaagagtggaggtccagtgctggttctggtccagttg
gagagagaagaagaggtgactgggcctgttattgccccactcttcccccagaaacgtgag
gagggctggtgggtggtgattggagaccccaagtccaacagcctgatctccattaagagg
ctgaccctgcagcagaaggccaaggtgaagctggactttgttgcaccagtgctgggcgtt
cacaactacacactgtacttcatgagtgatgcctacatgggctgtgatcaggagtataag
ttcagcgtggatgtgaaggaggcagacagcgatggagacagtgattcagactaa
DBGET
integrated database retrieval system
