Salmo trutta (river trout): 115164775
Help
Entry
115164775 CDS
T08542
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115164775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
stru03009
]
115164775
Ribosome biogenesis [BR:
stru03009
]
Eukaryotic type
Pre-60S particles
RNases
115164775
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Zwint
Motif
Other DBs
NCBI-GeneID:
115164775
NCBI-ProteinID:
XP_029573420
LinkDB
All DBs
Position
27:26986106..26997788
Genome browser
AA seq
1204 aa
AA seq
DB search
MDRMTSATLNGGKHRDRRDHCKRPHCLYKHDKDERGMFDNTLYGSPVTAAGVWKTHSTSI
NGVPQVNEAKDPCLLELERINKEIETVKNEVEKEQRRLSRYQTVQVDSERTGSKKVLIAK
SETPGKDLNGNSVKSSHRQSTTVNSPARRKYVVDNSKPRTDLEYDPLSNFSASLRSSGCS
EYKPGNEQKVRSGQGVKRTRESVCKEDQTKPPSQEFTASPASSNKLVDDSEEEGVLIIDI
PPLESDRKKCRAQKPCKITTNQSQEIKEEVHPVFVPTVAHAPLSIPLPVSTPGPEVVEVL
SPPAVSEIVKDDHLNTYGLSSVSASRENEGEPSAESVFDDLSKCLENLRSESERIVYYQE
AESTAQSNCGPEPVSLKMSLSSLQTRHHNEPVKTDVNLLMAEPGLLERELAYNCVENSNH
LQPNEVSYGHISSLPHVLVPPSVSSPHKLPIETQRSEQPVAQSSAQSYWSPVQSVSSVPC
LQKIPGQTPGLDFALPSPVPVANFVEQAATTVGFPQCQLLYGPTTSGTNEVELQSAPFEQ
PTVEAMNEHIVIDSSSEELEYSELSDSDTMEECYRIFMEEANKGEEGSTDQACTPVGAVD
VETPGLAVKPKPLPGPRKRVAHVSRYNEPPVGKSKAQVIVPFRGGAPQLSNPSKIQQLQQ
RASVLSAALKGGQAFISSNSQRKMVMLPSPAHQASHQATHHPVQYLIHQPTHQTTMQNSC
VNVIPVGTAIQVGNNLHFILPEGSYTLPITSANSPVTLVHTPVHTPVTPVPVQPQPTAYI
PAKPIPTKRKAKMRPEVSAKVPHDVRQRYVNLFVEEFLKTSVTVQDAFEKALAEEKTVYD
RSINKLKYLSVAVNALKRLKNQSSVSVKAGNETYVQLSKGNIPLNEKALWANGDVALYDS
LKEHILSEEILTENNYPLQHPEKSGSAVLYREDYKKGITDPLKRICCRCGATYSVNQVGK
HTRKEECNYHYGKGVEKKVPGGVETRYSCCEGVAGCPGCQVFKLHVHDAVSLDGFVSTLP
RPASDKGCPGVFSVDCEMCYTTQGLELARVTVVNSSLQVIYDTFVRPDNDVIDYNTRFSG
INEADVKGTSSSIRDVQETLLSFVSAETILIGYGLESDLCALKLLHGTVVDTSVSFPHRL
GLPHKMTLHNLTADYLRRIIQWVAMTQQKMLLPVWSSCCGRSKKMAKLNDGDLNKTGIAH
LRYS
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggacagaatgacatcagcaactctgaatggaggaaagcacagagacagacgtgaccac
tgtaagcggccccactgtctgtacaagcatgacaaagacgagcgaggaatgtttgacaac
accctgtatgggtcaccggtaacagcagcaggtgtttggaaaactcattccacttccatc
aatggagtcccacaggtcaatgaagccaaagacccttgccttttggagttggagaggatc
aacaaagaaattgagactgtgaagaatgaggttgagaaggagcaaaggagattatctcgt
taccaaactgtgcaggtggacagtgaaagaacagggtccaagaaagtcttgattgccaaa
tctgaaacaccaggtaaagatctgaatggaaatagcgtaaagtcttcacacaggcagtca
actacagtcaattctcccgcccggaggaagtatgtggttgacaactccaaacccaggact
gatttggaatacgaccccttgtccaacttctcagcttctttgcgatctagtggttgttct
gagtacaaaccaggtaatgagcagaaagtgagaagtgggcaaggtgtgaagaggactaga
gagagtgtttgtaaggaggaccaaactaagccaccttctcaagagttcactgcctcacca
gctagtagtaacaagctagttgatgactctgaagaagaaggggtcctcatcattgatatt
ccacctctggaaagcgatagaaagaagtgtcgggctcagaagccctgtaagatcaccaca
aaccaatcacaggaaatcaaagaggaagtccaccctgtttttgttcctactgtggctcat
gctccacttagtattccacttcctgtgtccactcctggtcctgaagtagtcgaagtccta
tccccacctgcagtgtctgagattgtgaaagatgatcacctcaacacttatggcctatct
agtgtttccgctagtcgggaaaatgaaggtgaacccagtgctgagagtgtattcgatgac
ttgtccaaatgcttggaaaacctgaggagtgaaagtgagagaatagtttattaccaagag
gctgaatccactgcgcaaagcaactgtggcccagaacctgtgtctctcaaaatgagtcta
tcatccttacagacacgtcaccataatgagccagttaagactgatgtcaacttactgatg
gcagagcctggattgcttgaacgtgagcttgcctacaactgtgttgagaacagtaaccat
cttcaacccaatgaagtctcatatggacatatatcttcactacctcatgttttagtccct
ccctctgtctcctccccccataaactccccattgagacccagagaagtgagcagccagta
gcacagagctctgctcagagttactggtcacctgtacaaagcgtatcatcagtgccatgt
ctgcagaaaataccaggccaaacaccagggcttgattttgccctgcctagtccagttccg
gtagcaaactttgtagagcaagcggccactactgtgggtttcccccaatgccagctgtta
tatgggccaactacgtcagggactaatgaagtagaattacaatctgctccttttgagcag
cctactgtggaagcaatgaatgaacacattgttattgattcaagttctgaggagctcgag
tattcagagttatctgatagtgacacaatggaggaatgctatcgaatcttcatggaggaa
gccaacaagggtgaagagggatcgacagaccaggcttgtacacctgtaggagctgtggat
gtggagacaccagggttagcagtgaaacccaaaccgttgccaggacccaggaagagggtg
gcccatgtgtccagatataatgagccaccggtgggcaaaagcaaagcccaggtcatcgtt
cctttccgaggaggagccccccagttgtccaacccctctaagatccagcagctgcagcag
agggcctccgttttgtccgctgctctgaaaggaggccaggcattcatctcctccaactca
cagagaaaaatggtgatgctgccttctcctgctcatcaggccagtcatcaggccacccac
catccagttcaatacctcattcaccagccaactcaccaaactactatgcaaaactcctgt
gtgaacgtcatacctgtgggaacagccatccaggtgggcaacaacctgcacttcatcctc
ccagagggaagctacactctgcccatcacttcagctaattctccagtcactctggtccat
accccggtccatactccagttacccctgttcctgtacaacctcagcctactgcctatatc
cctgctaagcccattcctaccaaacgtaaagccaagatgcgtcctgaggtcagcgccaaa
gtcccacatgacgtacggcagcgctatgtaaacctgtttgtagaggaattcctcaaaacg
tctgtcactgtacaagatgcttttgaaaaggctcttgctgaggagaagactgtgtatgat
cgcagcatcaacaaactcaagtatctgagtgttgcagtgaatgcactgaagaggctgaag
aaccagagctccgtctctgtcaaagctggaaatgaaacttatgtccagctatccaaagga
aatattccactcaatgaaaaagcactttgggcaaatggagatgttgcattgtatgacagt
ttgaaggagcacattctgtcagaggagatattgacggagaataactatcctcttcagcac
ccagagaaatctggcagtgccgtactgtaccgtgaagactataaaaagggaatcactgat
cctttgaagaggatttgctgtcggtgtggtgccacttactctgtgaaccaagtgggaaag
cacactcgcaaggaggagtgcaactaccactatgggaaaggagttgagaagaaggttcca
ggtggagtggaaacacgctacagctgctgtgaaggtgtggctgggtgccctggatgccaa
gtcttcaagctgcatgtccatgatgcagttagcctggatggctttgtcagtacccttcct
aggcctgcctctgacaagggatgcccgggtgtgttctcagtcgactgtgaaatgtgctat
accactcaaggtctggagctggccagagtgactgttgtcaactccagtttgcaggtcatc
tatgacacctttgtgagacctgataatgatgtcattgactacaacaccaggttttcaggc
atcaatgaagctgatgtgaaaggaacaagctcgtccatccgagacgttcaggagacacta
ctgagctttgtcagtgcagagactatactgatcggctacggcttggaatctgacctctgt
gcactaaagctgctccatggcaccgtggtggacacctctgtgtcgttcccccaccgcctg
ggcctgcctcataagatgaccctccacaacctgacagcagactacctcaggaggatcatc
cagtgggtggccatgactcagcagaagatgctgttgcctgtatggagctcatgctgtgga
aggtcaaagaagatggcaaaactaaacgatggtgatctgaataaaactggcatcgcccac
cttcgttattcatga
DBGET
integrated database retrieval system
