Salmo trutta (river trout): 115164829
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Entry
115164829 CDS
T08542
Name
(RefSeq) vacuolar protein sorting-associated protein 13A-like isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115164829
Membrane trafficking [BR:
stru04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
115164829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
DUF5764
Motif
Other DBs
NCBI-GeneID:
115164829
NCBI-ProteinID:
XP_029573529
Ensembl:
ENSSTUG00000020651
LinkDB
All DBs
Position
27:29028587..29094785
Genome browser
AA seq
3257 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDTSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAEQENPALEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDDVTNPKCPLSFGMSLQ
NLSLQTADENWKPCLLNEKAKLFFKLVQLDNLFAYWNVNSTLYSNHMPDEALRCLQNSMD
IYSSTPMKHDFIFRPITANAKLSMNPRSDVNFSSPKVDLVVNLREVAVELNRPQYISILE
LLGSVDMMSRNLPYRKYRPQFHVHTNAYIWWQYVITGIMEVDVKPRLHMWSWQRIHHHRQ
TVKRYRALYKSKITNKKPTEKLLREVEETERTLDIFNITLARQQAEMEASKAGLRIFRPG
MKVEEESQGWLGWMWSGWSGDDGAKSKEVKTGAFGELMTPAEKAKLYTAIGYSEVAVNHN
LPKNFEDIKIHFHMKRMSFSMKDNKDQNEILKVTVEDLKSMLTQRPGAQAIKLSAQLSLF
EVKGLANNRPAPTLLSSRKAAMVTGTPLLDILFETNPLDESADQRLHVESQPLEIIYDAV
TVNSMSAFFLPPDDLQLDELTNATLMKLEQFRDRTSTGLMYVIETQKVLDLNVNLMASYV
IVPQTGFYDSTQNLMLLDLGHFKVSSLSRKGLPQLSVGSRTIQDIMSQAYDSFNIKLSSL
QFLYSKPDGDWRKARKMKQSALHILEPVDVKVVFSRAMVVTDSRMPKFKIFGEMPLLSLR
ISDDKVRAVLELINSIPLPESRPAPRSTNTHSTPKAPKQPYTPQLTPRQPTMAELRNSLI
WESGSEEDLFYDAPSSPIGDSPFFPNNMPSPLQRSDSVKRRGLVKKDPKKNMTEFLMMFE
INKLSVQLCRLSRGQEVTVLHLDIERLGTELKIRTFDMTSNTFLHEICLECSEYMDSEEK
KVHLITTLDNTEEDLLTLEYTKADKNGPEFKSQYKNTEQSVTVNFSSLDVHLHTEALLNA
MNFLNSLLPPTKEAVPSKEELPTIPEEDEGEGEGEEGEKEESAVAKRTSSKKSKFEDVVN
LHIRADLNCLKVFIRGQSHMIAEIRIEGLVSEVLMRRKAVEVLANLKNIVILDCDKEALY
KQCVSIADKEVFAFRMVNHTDATEGDAYLDMGKVDTSISLTVGCIQVIFLNKFVSSILAF
INNFQAAKEALAEVTVQAAEKAATGVMELAERSTRISLNVDFKAPLVFLPQSSSSTNVTV
ADLGMVTVKNCFALVDSQTHVKIPPIIDTMTVGLSDLKMYRTTFEKGRFQGEIQVLKPVN
LDLSIQRNLSASWYHSIPDIKITAHLKPMNLILSQDDMTVVLRTLGENMSETSDAASPRP
PLSTVDRSDTATTKGSQGTGGNIVVTAAVVETQKSTKLKNTLKVDFKFDSMTLVLYSPNG
TEVQVLDSRDDQLMLAEFTLGTISTSVHMFSDGSMKASVKLTDCLLDDKRRRVKNITARM
MAIRLSAERNVMVEVNYNQGREGTSLEMVVQDVYLCASMEFLLTVADIFLKASQQGFSSA
APKNSSTKPTVTATAASKEPAPVAVKSVMNVLVKNPEIVFVADLTRADAPALVMTMECEL
VMKSNLDGQLMTAVVKDLKVVACPFLREKRRNKETTVLQPCQVFFKSTQSSTSPQAMEVS
IKALTLKVSPIIINTVITIQSVLSPAGADMPQSELESPVPPDLWERRSWQDLKLWFLEEE
GKDEDAQSLVRLIPQGESLQVAISSICLTLEAGVGHRTVPMLLAKSSFHGDVKNWSTLIN
LHSQLNLEVHYFNEVMGVWEPLLEPLEDEIRDSFRSWTLGLKMKKKPVKYSGISDEVDCS
IPDYKTIISISSKDQLNITLSKCGLGMLSNLGTAFAEAAKQTSESFQEDEAPFVVKNHLG
LTVSVVYSEMFCPLGREATENRVELQNGESVNMDYRRTTTHSDQFSAMTSLVAKDYYIQP
TPVGHTSASVIPLIKVGRGMYSVMHKVSGVTRFLVCQIYSVQGSKHIKIRSPFQIINHFS
IPFRVMEGSTCLGISLPTEEFCVPLDSYRSKLSLQPITEGDNQYDSSEGFSYESVSQQPG
ARVQQTCHRHGNSASVLMVNIVPLKDTVTSQHTGVAGEHFDEPYILHLWPSVLLRNLLPY
PITYRLQDSEEPAPITLIDGHSAELHTAVMDLSSLELHLLNYLGQDWKAHYGLRGDQDEI
TFIVFRSLRDEEEEVRLGEGGERKRAELDIAVHVKYDAGLSEVAIHSPYWMVNKTGRLLQ
YKANDIHRKHAMDYDMPLLFSFKPRNFLHNNKVRLMISDSELSDDFSLDTVGSYGEVKCK
GRLKDYLIGVKIDPSSFSLTRIVSFVPYYLLVNRTKHVIWVGEEGQDHWTKARPHQAAIP
FWPEKDSKMLKVKVEGCLSTPQTMDFTKPENCLLLHLDNTLGGVIVDVNLSDHSIIICFS
DYHDGAAPFLIINHTQEQTLEFCQRLRRDSSKCVTDELLELSFSLEETQRSSQKEKDKLS
PGKAVYYTWAEPTGSRFLAWQCGSYSGELKSEEDLRLDVNEEGKLYLISFYEGLQRVALF
TEDRRIYKLLCESEKAELAEQEIILSLQDVGVSLVNNSSHQEVSFIGITSSDVVWEFKPK
KKSRWKPLSFKYAALLETHFREYTESESVDNTILDLESNFQVSLTPNRQDMRMMKPYDAP
IRRNFLPGVKVEYSVSARQSAYRVQINRIQIQNQLPGAIFPYVFYPIKLPKSVTMDSEPK
PLTDISIVTRAAGHSDISRIKYFMVLIQEMDLKLDLGFLYAILDLFTPETASVMTSEQMV
ELFEKDIEYLKTELNNISAADTSPISLYEYFHISPIKLHLSLSLSSGGEDGNKEKRETEV
IPVQSLNLLLKSIGATLTDVQDVVFKLAYFELTFQFRTRQQLQWEVIRHYSKQAIKQMYV
LVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVKALVGGAVGGIA
GAASRITGAMAKGVAAMTMDEEYQQKRREAMNKQPSGLREGLARGGKGLVSGFVSGITGI
VTMPIRGAQKEGVAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRAAETSQDVESLR
PPRFIHEDGVIRPYKEREGVGSQMLQKIENGQFAKYRYFAHAKVNESDYLMITKSGIFFV
TKGTFGQLTCEWQYLFDEFTKKPMIVEGRRLRIEAKERVKSVFHAKEFGKIINFKSPEIA
EWVLTKLEDARESLHKY
NT seq
9774 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtagatgtcctaaacaggtttctgggggactacgttgtg
aaccttgacacctcacaactcaagctcgggatttggggaggtgatgctgtgctcagaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtaagagccgga
catataggacgcttggagctgaagattccatggaagaatctgtacacccagtcagtggaa
gctacactggatggagtttacctgctcatcgtgcccacagccagtataaagtatgatgcc
gagaaggaggagaaacagcttcaggaggctcgtcagagggagctgcagaggatcgaagag
accaaacagaaagcagcggaacaagaaaaccctgcacttgagaaacaagacacctttgtg
gagaaactggtgacacaggtgatcaagaaccttcaggtgaagatctccaacatccacatc
cgctatgaggatgacgtcaccaatcccaaatgcccattatcatttggaatgtctctacag
aacctcagccttcagacagcagatgagaactggaaaccttgtcttctgaatgagaaagcc
aagctgtttttcaagcttgtccagttggacaatctctttgcctactggaacgtgaactca
acgctgtactccaatcacatgccagacgaggccctgcgatgcctccagaacagcatggat
atctacagttccacccccatgaaacacgatttcatttttcgtccgataacggccaatgcg
aagctgagcatgaacccccggtcagacgtaaacttctcttcacccaaggtagacttggta
gtaaacctgagagaggtggccgtggagctgaacaggccacagtatatcagcattctggag
ctcctgggctcggtggatatgatgtcacgcaacctgccgtacaggaaataccggccgcaa
ttccacgtgcacaccaacgcctacatatggtggcagtatgtgattacgggcatcatggag
gtggacgtgaagccacggctgcacatgtggtcgtggcagcgcatccaccaccaccggcag
acagtcaagcgttacagagcgctctacaagtccaagatcaccaacaagaagcccactgag
aagctgctcagggaagtggaggagactgagcgaactctggatatttttaacatcacgctg
gccaggcagcaagctgagatggaggcgagcaaggcgggtctgcgtatctttcgtccgggg
atgaaggtggaggaggaatcccagggctggttgggctggatgtggtccggctggtcagga
gatgacggcgccaagtccaaggaggtcaagaccggagcttttggtgagcttatgactcct
gccgagaaggccaaactctacaccgccattggctacagtgaggtagctgtcaatcacaac
ctgccaaagaactttgaggacattaagatacattttcacatgaagagaatgtctttctca
atgaaagacaacaaggatcagaatgaaatcctcaaggtcacagttgaagacctgaaatcc
atgctgacccagaggcccggagcacaagccattaaactgtcggcccagcttagtctgttt
gaggtgaaaggactggccaataatcggccggcgcccacgctgctgtcgtcaaggaaggct
gccatggtaacagggacccccctgcttgacattctgtttgagaccaaccctctggatgag
agtgctgaccagcggctccacgtcgagtcccagcctctggaaatcatctatgacgctgtg
acggtgaacagcatgtctgcgttcttcttgccgcctgatgacctccagctagacgagctg
accaacgccactctcatgaagctggagcagttccgagaccgcacctccacggggctgatg
tacgtgattgagacccagaaggttctggatctgaacgtcaacctcatggcctcctacgtg
atcgtgccccaaaccggcttctacgactccacccagaacctcatgctattggatctgggt
cacttcaaggtgtcaagtctgagcagaaaggggctaccccagctctctgtagggagcaga
actatacaggacatcatgtcccaagcctacgacagcttcaacatcaagctcagcagccta
cagttcctctacagcaaaccagacggggactggaggaaagcccgtaagatgaagcaatcg
gccctccacatcctggagcctgtcgatgtcaaggtggtgttcagcagagccatggtggtc
acagactcacgcatgcccaagtttaagatctttggggagatgcctctcttgtctctgagg
atctctgatgataaggtgcgggccgtgctggagctgattaacagcatcccgctgccggag
agcaggccggcgccgcgcagcaccaacacacactctacacctaaggctccaaagcagcca
tacacccctcagctaacccccaggcaaccaaccatggctgaactgcgcaactccctcata
tgggaatcaggctcagaggaggacctgttctacgatgctcccagctctcctataggagac
agtccgttcttccccaacaacatgcccagccccctgcagcgctccgactcggtcaagagg
agaggtctggtcaagaaagaccccaagaagaacatgacagagttcctcatgatgtttgag
atcaacaagctgtctgttcagctgtgtcgtctgtctagaggccaggaggtcacagtgtta
cacctggacatcgagcgtctcggcaccgagctaaagattcgcaccttcgacatgacatct
aacacctttctacacgagatctgcctagagtgctcagagtatatggattcagaggagaag
aaagtgcacctgatcaccactctagacaacacagaggaggacctcctcacattggagtac
actaaggctgataagaacgggccagaattcaagtctcagtacaagaacactgaacaatca
gtaacggtgaacttctcatctctggatgtacacctgcacacggaggctttgctcaacgcc
atgaacttcctgaacagcctcctccccccgaccaaggaggcggtgcctagcaaggaggag
ctgcccacaatcccagaggaggacgagggagagggagagggggaggagggcgagaaggag
gaatcggccgtggcaaaaagaacatcttctaagaagtcaaagtttgaggacgtggtgaat
ttgcacatcagagctgatctcaactgtctgaaggttttcatccgaggccagagccacatg
atagcagagatccgcattgagggcctggtgtcggaggtgctgatgaggagaaaggcggtc
gaggttctggccaacctgaagaacatagtcattctggactgtgataaggaggcactgtac
aagcagtgtgtgtccatagctgataaggaggtgtttgctttccgcatggtgaaccacacg
gacgctactgagggtgatgcctatctagacatgggtaaagtggacaccagcatctccctg
acggtgggctgcatccaggtcatcttcctcaacaagtttgtctcctccatcctggccttc
atcaacaatttccaggcggccaaggaggccctggctgaggtgacggtacaggcagcggaa
aaggcagccacgggggtgatggagcttgctgagcgcagcacgcgcatctctctgaatgta
gacttcaaagctcctcttgtcttcctgccgcagtcgtcctcctccaccaacgtcactgtg
gctgacctcggtatggtcacggtcaagaactgcttcgccttggtcgactcccagacgcat
gtcaagatccctcccatcatcgacaccatgaccgtgggcctcagtgacctgaagatgtac
agaaccacctttgagaaggggagatttcagggggagatccaggttctgaagccggtcaac
ctggacctgtccatccagaggaacctgtcagcctcctggtaccacagcatccctgacata
aagatcactgcccacctcaaacctatgaatctgatcctgagtcaggatgacatgacagtg
gtgttgaggactctgggtgagaacatgtcagagacgtcagacgctgcttcccctcgtcct
cctctgtctacagtggaccgctccgacactgccactaccaaaggctcgcagggcacagga
ggcaacatagtggtaactgctgcagtggtggagacccagaagagcactaagctgaagaac
acactcaaagtagacttcaagtttgactccatgactctggtcctgtacagccccaatggg
actgaggtgcaggtgttggactccagggatgatcagctgatgctggctgagttcaccttg
ggaactatctctacatctgtccacatgttctcagacggatccatgaaggcctccgtcaaa
ctcacagactgcctgctagacgacaagagacgcagagtcaagaatatcactgccaggatg
atggcgattcgtctgagcgctgagaggaacgtgatggtggaggtgaactacaatcagggg
cgtgaaggcacctctctggagatggtggtgcaggatgtctacctctgtgccagcatggag
ttcctgctcaccgtggccgacatcttcctcaaggccagccaacagggtttctcctcagcc
gcccccaagaacagcagcactaaacccacagttacagccaccgccgcttccaaggaacct
gctccagtggcagtaaagtcggtgatgaatgttctggtgaagaacccagagattgtcttt
gtggctgacctgacgcgtgccgacgccccagccctggtcatgaccatggagtgcgagctg
gtgatgaagagcaacctggatggtcagctgatgacggcagtggtcaaggacctgaaggtg
gtggcctgccccttcctgagggagaagaggaggaacaaggagaccactgtgctgcagccc
tgccaggtgttcttcaagagcacacagtcctccacctccccgcaggccatggaggtctcc
atcaaggcactgacactcaaggtgtcgcccatcatcatcaacacagtgatcaccatccag
tcggtgctgagcccggccggtgcagacatgccccagtcggagctggagagccccgtgccc
ccagacctgtgggagcgccggtcctggcaggacctcaagctgtggttcctggaggaggag
ggtaaagacgaggatgcccagtccctggtccggctgattccccagggtgagtccctgcag
gtggccatttcctccatctgcctgaccctggaggctggggtgggccaccgtaccgtcccc
atgctgctggccaagtcctccttccacggggacgtcaagaactggagcaccctcatcaat
ctgcacagccagctcaatctggaggtacactacttcaacgaggtgatgggggtgtgggag
cctctgctggagcccctagaggacgagatcagagacagcttcagatcctggactctggga
ttaaagatgaagaagaagccagtaaagtactccggtatatcagatgaagtggactgcagc
atcccagactacaagactatcatcagcatcagcagcaaggaccagctcaacatcaccctc
tctaagtgtggactgggcatgctcagtaacctgggcacggcctttgcggaggcggccaag
cagacatcagagagtttccaggaggacgaggcgccgttcgtggtgaagaaccatctgggt
ctgactgtgtcagtggtgtacagtgagatgttctgccccctgggccgtgaggccacagag
aaccgtgtagagctgcagaacggagagagtgtcaacatggactaccgtcgcaccaccacc
cactcagaccagttctctgccatgacctcgctggtggccaaggattactacatacagccc
actcccgtgggccacacttcagccagcgtgattccgttgatcaaagtggggcgtggcatg
tacagtgtcatgcacaaagtctctggggtcacccgcttcctggtctgtcagatctactct
gtgcagggaagcaagcacatcaagatccgctctcccttccagatcataaaccacttttcc
atcccgttcagagtgatggagggctccacgtgtctggggatctcattacctacagaggag
ttctgcgtgcctcttgactcctacaggtcaaagttgagcctgcagccgataaccgaagga
gacaatcaatatgattcttccgagggcttcagctacgagtcagtgagccagcagcctggt
gcacgtgtacagcagacctgtcatcgacatggcaacagcgccagcgtgctaatggtcaac
atcgtacctctgaaagacacagtgacatcacaacacacgggagtggctggggagcacttt
gatgagccctacatcctgcacctgtggccctccgtcctgctccggaaccttctgccttac
cccatcacctatcgcctacaggacagtgaagaacccgcccccatcacactgatagacggc
cactcagcagagcttcacaccgctgtcatggacctgtccagcctggaactccacctcctc
aactacctggggcaggattggaaggcccactatggtctccgtggcgaccaggacgagatc
accttcattgtgttccgctccctgcgcgatgaagaggaggaggttaggttaggggagggt
ggagaaaggaagcgggcagagctggacattgcggtgcatgtgaagtacgatgcgggcctg
tctgaggtggccatccattctccctactggatggtgaacaagacgggtcgcctgctgcaa
tacaaggccaacgacatccaccgcaaacacgccatggactatgacatgcccctgctcttc
tccttcaagccacgcaattttctgcacaacaacaaggtgcggctgatgatctcggacagc
gagctgtctgatgatttctccctggataccgtgggtagctatggtgaagtgaagtgcaaa
gggaggctcaaagattacctgatcggggtgaagatcgaccccagcagtttcagcctgacc
cgtatcgtgagctttgtgccgtactacctgttggtgaacaggaccaagcatgtgatctgg
gtgggagaggagggccaggaccactggaccaaggccagaccacaccaggcagccatccca
ttctggcccgagaaggactccaagatgctcaaagtcaaggtagaaggctgtctgtcaacc
cctcaaaccatggacttcaccaaaccagaaaactgcctgttgctgcacctggacaacact
ctgggcggagtcattgtggacgtgaacctatcagaccactcgatcattatctgtttttcg
gactaccacgatggagccgcccccttcctcatcatcaaccacacccaggagcagacgctg
gagttctgccagagattgcggagagactcgtcaaaatgcgtgacagacgagctgctcgaa
ctctccttctcactagaggagacccagcgcagcagtcagaaggagaaggacaagctgagc
cctgggaaggccgtgtactatacctgggctgagcccaccgggtcacgcttcctggcctgg
cagtgtggcagctacagtggtgagctgaagagtgaagaggacctgcggttggacgtgaat
gaggagggtaagctgtacctcatctcgttctacgagggcctccagcgggtggcgctgttc
accgaggacaggcggatctacaagctgctgtgtgagagtgagaaggccgagctggctgaa
caggagatcatcctctccctgcaagatgtgggtgtctccctggtcaacaacagcagccac
caggaggtgtccttcattggcattaccagttcagacgtggtgtgggagttcaagccaaag
aagaagtctcgctggaaacccctgagttttaaatatgcagcgctgctggagacccacttc
agagagtacaccgagagtgaatcagtggacaacaccatcttagacctggagagcaacttc
caggtgtctctgacgccaaacaggcaagacatgaggatgatgaagccatatgatgctcca
atcaggaggaacttccttccgggggtgaaggtggagtacagcgtatcggcgcgccagagt
gcctaccgtgtccagatcaaccgcatacagatccagaatcagctgcctggagcaatcttt
ccctatgtcttctacccaataaaactaccaaagtctgtcaccatggactcagagcccaaa
cctctgaccgacatcagtattgttaccagggcagccggacactccgatatctcccgcatc
aagtatttcatggtgctgatccaggagatggacttgaagttggacctgggtttcctctac
gccatcttggatctgttcaccccggagaccgccagcgtgatgacatcagagcagatggtg
gagttgtttgagaaggacattgagtatctgaagactgagctgaacaacatctcagccgct
gacacgtcccctatcagtctctatgagtacttccacatctctcccatcaagttgcaccta
agtttgtctttgagttctggaggagaggatggtaataaggagaagagggagaccgaggtc
atccctgtccaatccctcaatctgctgctgaagagcatcggagcaaccctcactgacgtg
caggacgtcgtcttcaaattggcctatttcgagctgacattccagtttcgcactcgccag
caactacaatgggaggtcatcagacactactcgaaacaggcgataaagcagatgtatgtg
ctggtattgggcttggacgtgctgggaaacccctttggactgatccgaggtctgtctgag
ggagtggaggctttcttctatgagccctatcagggagctatccaaggaccagaggagttt
gtggaggggatggcgctgggggtgaaggcactggttggaggagcagtggggggcattgcg
ggcgctgcctccaggataacaggcgccatggcgaagggtgtggctgccatgacgatggat
gaggaataccagcagaagagacgagaggctatgaacaagcagcccagcggcctaagagag
ggcctggctcgtggaggcaaaggactggtctctggcttcgtcagtgggatcacagggatc
gtcaccatgcccattagaggtgctcagaaggagggtgtggcaggcttctttaagggtgtc
gggaaggggctggtgggggctgtggccagacccacaggaggtatcatcgacatggccagc
agcactttccagggcatcaagagggcggctgagacgtcccaggatgtggagagtctgcgt
ccacctcgcttcattcatgaggacggggtcattcgaccatataaggagagagaaggcgtt
ggcagccaaatgctacagaaaattgagaatggacagttcgccaagtacagatactttgct
cacgccaaagtaaacgagtctgattacttgatgatcaccaaaagtggaatctttttcgtg
accaaaggcacatttgggcagcttacctgtgagtggcagtatctgtttgacgagttcacc
aagaagcccatgatcgtggaggggaggaggcttcggatagaggcaaaggagagagtaaag
tctgtgtttcatgccaaagagtttgggaagattataaacttcaaaagtccagaaatagcc
gagtgggttcttaccaagctggaggacgccagggagagtctacacaaatactga
DBGET
integrated database retrieval system
