Salmo trutta (river trout): 115164875
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Entry
115164875 CDS
T08542
Name
(RefSeq) snRNA-activating protein complex subunit 4-like isoform X1
KO
K09453
snRNA-activating protein complex subunit 4
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115164875
03021 Transcription machinery [BR:
stru03021
]
115164875
Transcription factors [BR:
stru03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-like factors
115164875
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
snRNA-activating protein complex (SNAPc)
115164875
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
HTH_CHD1_Hrp3
Myb_DNA-binding_2
SLIDE
Motif
Other DBs
NCBI-GeneID:
115164875
NCBI-ProteinID:
XP_029573612
LinkDB
All DBs
Position
27:30177862..30205950
Genome browser
AA seq
1409 aa
AA seq
DB search
MHLSKMLSLIAKGASFIMSSDDLLAQRERIERQILALEQNLGSESNSGIELLSSDSCASD
DGSDDNASQPEDLGPPGNLEAERERIQREIEELECTLGPGAFNAEILSDVDGQGSATELS
EEDSAEELDLPQNIDTCLQINLVYQEVLKEKLEDLERLLTDNQQQQKEIMSQLSGTGTPQ
ATTSGEPTLKLFLGSFLNPYFRDKVTFLGPPANPETREKMSKRIRPTDDVKMKRWEGWQK
TLLINAVVKDSMKRMTQPKLSKIEYLTQKMAKAENMEKLILQKQITEIEKDIEAISALKE
DELMGGRYDDHDWQKISNIDFEGIREAEDIKSFWQNYLHPSINKASWKEDEIEMLKKVAV
KYGHHNWDQIADKLGTNRTAFMCLQTYQRYICTDFKRRMWGRLEDDILRELVEKMRIGNY
IPYTQISYFMEGRDSCQLMYRWTQVLDPTLTKGYWSKEEDEMLLRAVAKHGAGNWWKMRQ
DVPGRNDSQCRDRYVDVLIGNVKKGPFDEEEKAQLRQLVEKYGLKWAKIASEMPNRIDCQ
VLQQWRRMTGYKPRPRRDRSRRGLQRRKAVAVRSIKSRLKRLDDDVHSSADEEESVKMEF
MDSDDDKKQKFFELYGSDQESDIFEDYTQPDMEQWIPMREKQFEGMVRSVMVKRPSKDTT
QEQAATDSQAAARKFMVVRSTVLDRFGKPAATVIGQNPPILAKKDCNSDLAMLQVCYGEV
RNLITWKKTNATKHKNSVSTSSDQGTPHNCSRQKDSSANSETYTTLNYSLQLAVTPWVGN
VLMPPPISSNKLSEADMVRERSESIGLTKTPVFLLFLQVLRVDAEGCKQIIKMRNKQAVL
MGHRSWEAKQALLKKPKQRHGPRTVASMLNQKGNEQQNSQQQNSQLVMMIPQTFVIGQPV
VQSIPHPTVPFTPTSRQQLMPSTLTQPGPSTPSRPIPSTPGQPLPSTPSQPIPPAPVQSS
TIIDRVNVQVNENLSAKKRNLKPTEKSQAPKEVKDAAIAEKSVEQSPKRKKARTQSPPKG
NLVGQLSNVILSPPQTAWVLTRNGLVPISGIGIQMTPQNLPANAFAPACPSPVVINQQVP
LTLNAAAAQASSDVTHVCPLPSASSIAQGTASPSVFSSPSTTFISNTAPRMTNPVNSMIM
TNPALQTVATTGPQLNAVSPVLSVPMNTVISAPIRPQTGPPQAFVLNVPPGSLPASFPQG
AFRIMQLYPPKRVPPPRNPEVIQFDPNLMFMENPAKVSEWLNGKNGIALPELDVTLPYLP
PFVSSLNTFLSLLKCKTTLAISAMLVLRPEEKENQEEEQQVAAVRSLVAERFIHNPGYLL
LKARFLSCFTMPALLATINPVKFSMSPTTDHSDVEEEPFRNRPGMQNYTVYEQPTTLQAP
LLSTDGTGSPAIFFSGITTRNKSRDLDME
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgcacctaagcaaaatgttgagtctcatagcaaagggtgcctcattcattatgtcctcg
gatgaccttcttgcacagagggagagaatcgaacgccagattttggcgctcgagcaaaac
cttggatccgaaagcaattccggcattgaactactatcttcagatagttgtgcatctgat
gatggatcagacgacaatgcttctcaaccagaagatttgggtcctccggggaacttggag
gcagagcgggagcgaatacagagagagattgaagagttggagtgcactcttggtccaggt
gcatttaatgctgagattctttcagatgtggatggccaaggaagtgcaacagaattgagc
gaagaggacagtgctgaggagctggacctaccccagaacatagatacatgtctgcaaatt
aacctggtttatcaggaagtgttgaaagagaaattagaggatctggagcgactgttaaca
gacaatcaacagcagcaaaaagagattatgtctcagctatctggcacaggaactccccag
gctaccacatctggagaacccacactgaagcttttcttggggagctttctgaatccctat
ttcagagataaagtcacatttctgggcccacccgctaatccagaaaccagggagaagatg
agtaaaagaatcagacctactgatgatgtcaagatgaaaagatgggaggggtggcagaag
actctgctgattaatgctgtggtcaaagacagcatgaaacgcatgacacagcccaaactg
tccaagattgaataccttacacagaaaatggccaaagctgaaaacatggaaaagctaatc
ctgcagaaacaaatcactgaaattgaaaaggacattgaggccatcagtgcactgaaggag
gatgagctgatgggtggccgctatgatgaccatgactggcaaaagatttccaatattgat
tttgaaggtatccgtgaagctgaggacataaaaagcttttggcagaactacctgcatccc
tccattaacaaagccagttggaaggaagacgaaattgaaatgctcaagaaagttgctgtg
aaatatgggcaccacaactgggatcagattgctgataaacttgggaccaacaggacagcc
ttcatgtgtctccagacataccaacgctacatctgcaccgacttcaagaggagaatgtgg
ggcagactggaggatgacatccttagagagctggtggagaagatgcggatagggaactac
atcccttacacccagatctcctatttcatggagggccgggattcatgccagctgatgtat
cggtggactcaggttctggacccgaccctcacgaaaggctattggtctaaagaagaagat
gagatgctactgagagcagtggctaaacacggagcggggaactggtggaagatgcgtcag
gatgtgcctggaagaaatgatagccagtgtagggacaggtatgtggacgtcctgattggg
aacgtgaagaaggggccctttgacgaggaggaaaaggcgcaactccgacaattggtggag
aaatatggacttaaatgggctaagatagcttctgaaatgcctaacagaattgactgccag
gtccttcaacagtggaggagaatgacagggtacaagcccagacctcggagggacagaagt
agaagaggattgcagaggagaaaggcagtggctgtgaggagcatcaagagtaggctgaag
aggctagacgatgatgtgcactcaagcgccgatgaagaggagagcgtcaagatggaattt
atggacagtgacgacgacaagaaacagaagttctttgaactgtacggatctgatcaggaa
agtgacatttttgaagactacacccaaccagacatggagcaatggatccccatgcgagag
aagcagtttgaagggatggtgaggagtgtgatggttaaacggcccagcaaggacacaacg
caagagcaggcagcgacggacagccaggccgcagcacgcaagttcatggtggtacgctcc
accgtcctggaccgctttggcaagcctgctgccactgtcattggacaaaaccccccaatc
ctggcaaagaaggattgcaacagtgacctggccatgctccaggtgtgctatggagaggtg
aggaacctgatcacttggaagaaaacaaatgccacaaaacataaaaacagtgtgtctacg
agcagtgaccaggggacgcctcacaattgctcaaggcaaaaggactcatctgccaacagt
gaaacctacaccactctcaactattcccttcagttagcagtcactccctgggtgggcaat
gtgcttatgcccccaccaatctcttcaaacaagctcagtgaagctgacatggtgcgagag
agatcagagagcattggactcaccaagaccccagtgttcttgttatttctgcaggtcctc
cgtgtggatgctgagggctgtaagcagataattaaaatgcgtaacaaacaagcggtactc
atgggacacagatcttgggaagcgaaacaggctttattgaaaaaaccaaagcaacggcat
ggtcccagaacggtagccagtatgctgaaccagaagggaaacgagcagcagaacagccag
caacagaacagtcaacttgtgatgatgatccctcagacctttgtcattggacagcctgta
gtacagtccatcccacatcctacagtcccattcactccaacttccagacaacaactcatg
ccttccacacttacccaacccggaccctctacccccagccgacccataccttccacccct
ggtcaacctttaccctctacccccagccaacctataccccctgctcctgtccaatcctca
accataatagacagggtgaatgttcaggtaaatgagaatctttcagcaaagaaacgcaat
ctcaaacctactgagaaatcacaggcccccaaagaggtcaaggatgctgcaattgctgaa
aagtcagtggaacagtcgcctaaacgcaagaaagcccgtacacaaagtcctcccaaagga
aacctggttggccaactttctaacgtaattctgtcccctccacaaactgcctgggtcctg
acgcgcaatggacttgtgccaatcagtggcattggcattcagatgacacctcagaatcta
ccagcaaatgcttttgcacctgcttgtccatcgcctgttgttatcaaccagcaagtccct
ctaacactaaatgctgctgcagcacaggcctcctccgatgtaacccatgtctgcccattg
ccctctgcctcatccatagcacagggaacggcctccccatctgttttctcctctccctcc
actaccttcataagcaacactgctccaaggatgaccaacccagtgaacagcatgataatg
actaacccagccctgcagactgtggcaaccactggtccccagctcaatgcagtgtcacct
gttctctctgttcccatgaacacggtcatctcggctcccattagaccacagactggcccg
ccacaggctttcgtcctcaacgtccctccaggctctcttccggcctcattccctcaggga
gccttccgaatcatgcagctttacccccctaaacgtgtccctccaccccgcaatccagaa
gtaatacagtttgatcccaacctgatgttcatggagaacccggccaaagtgagcgagtgg
ttgaatggcaagaatggaattgcgcttccggagttggatgtcactctaccctaccttccc
ccctttgtcagcagcctgaatacctttttgagtctcctgaaatgtaaaacgacattggca
attagtgccatgctggtcctgcgcccagaggagaaagagaatcaggaagaggagcagcag
gtagcggcagtacggagcctcgtggcagagcgtttcatccataacccgggttaccttctc
ctgaaggctcgcttcttgtcttgtttcaccatgcctgctcttctggctactatcaatcca
gtcaaattctccatgtctcccaccacggaccacagtgatgtggaggaggaacctttcagg
aaccgtccagggatgcagaattatactgtgtatgaacagccaacaacactccaggcccct
ctgctaagcactgatggaacaggatctcctgccatcttcttctccggaatcaccacaaga
aataaaagccgtgacctagacatggagtaa
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