Salmo trutta (river trout): 115165038
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Entry
115165038 CDS
T08542
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1-like isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru04621
NOD-like receptor signaling pathway
stru05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
115165038
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115165038
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
stru04054
]
115165038
Pattern recognition receptors [BR:
stru04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
115165038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
LRR_6
NOD2_WH
LRR_4
PYRIN
HTH_MCM7
AAA_30
AAA_16
ATPase
SLFN-g3_helicase
PIF1
AAA_22
Motif
Other DBs
NCBI-GeneID:
115165038
NCBI-ProteinID:
XP_029573919
Ensembl:
ENSSTUG00000007192
LinkDB
All DBs
Position
27:42513226..42541348
Genome browser
AA seq
1083 aa
AA seq
DB search
MNQKPDMESSSMKKSSCNSEDLNKEIYSLKISLSEDDADFPERETESGNLERPVSPVFSV
LSMESDVFSNDVTDKDILDSSTQQERPTSPDRLSLKSDCSMFRPENFTGLLPHDSSGNLE
RPVSPVFSVLSMESDVFSNDVTDKDILDSSTQQERPTSPDRLSLKSDCSMFRPENFTGLL
PHDSSLQQSEDNSFEKTHKIPIQALKSPLEKLTEDEWEQFMTHLNKKYPSIFTGHLHNQS
ALEVVKNILVSLKEGAFRATVNILKNMDQNELADSLQRDEGVCQFCEKLQHQLKQQTYFL
PTITQGEKVQLQNMYIDTLMELLSDKNERLGYLEGVDQLLSQKGVFNDKAQVTFITGDAG
TGKSILLQQSQSLWSKGELDTGARFLFAFSCRQFSAFQESDKISLWDLIFKHNYTCPDGD
MRNNVVEYILKNPEMAIFTFDGYDEINSNFDQGTDYEISSPEETAHPLVLLKSLLSGKLL
NGSQKVVTARTGTEFLSMLVRKRVILKGFSIDQLQKYTDKYSQGNEDQKLVSVQINSNHL
LQSLCLIPLFCWIVFESCSQSVEILKTLDHGVTLTSIFMDLVRAFFSRSNLNIYTEAGSW
KLRAFAKLAHLGMEKEKFVLNYDHLSSCGIGENDLKVGILIPASYYDNGKTATFQFMHLT
LQSFLTALHLVLEEQMSTRGILQFFPQLQSQHFLHLPWRGGSKSQTKSSSQTNEHHHYTN
LFLCGLLSKQNNDLQEPLMSLPLLRKKQELLFSFLSDNVKLNFRNLPLDKIDDGIAVRLT
HDMLRMLRYIFETRSDKLAKLAAKGFSAQVIKLTYCKVDSFDCEVLAFVLQYQKEFYCIN
LDNNNISDYGIRQLKPLFSNLTTLRLCDNQIQDEGVAIFTNEFLKYKALKGLTLFTNHIT
DIGAKHIARIIEECPHFRRLALGNNRITGEGGRYLANAIQRSKAIYYVGMWGNKIGDEGA
KHFAEAIRNHPNLSAVSLAANGITFSGGRSLAAALKENTVLKSLWLHDNELTDDNAADFA
EVIRSSTTIHQLWFINNKMTVNGVRLLASSLQYNPSITMLCMKDNLLSAEEVKEFENETR
MVF
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagaagccagacatggagtcttcctcaatgaagaagtcatcctgcaattctgag
gatcttaataaggagatatattccctcaaaataagtctgtctgaagatgatgcagatttt
ccagagagggaaactgaaagtggcaaccttgagagacctgtgtctccagtattcagtgtg
ctgtcaatggagagtgatgtcttctccaatgacgtcactgataaggacattcttgactca
agtacacagcaggagagaccaacatcaccagaccgtctgtcattgaaaagtgattgttca
atgttccgaccagaaaacttcacagggctgttgcctcatgattcaagtggcaaccttgag
agacctgtgtctccagtattcagtgtgctgtcaatggagagtgatgtcttctccaatgac
gtcactgataaggacattcttgactcaagtacacagcaggagagaccaacatcaccagac
cgtctgtcattgaaaagtgattgttcaatgttccgaccagaaaacttcacagggctgttg
cctcatgattcaagcctccagcagtcagaagacaattcatttgagaagacacacaaaatt
ccaatccaggcactcaaaagccctttagagaagttgacagaggatgagtgggagcagttc
atgacccatctgaacaagaaatacccttcaatcttcacaggccatctgcacaatcagagt
gcccttgaagttgtcaaaaacatacttgtgagcctcaaagagggggctttcagggccact
gtgaacattctgaagaacatggatcagaatgaacttgctgattcactgcagagagacgag
ggagtctgtcagttctgtgagaagctacagcaccaactgaaacaacaaacatatttcctc
cccactatcactcagggagagaaagttcaactgcaaaatatgtacatagacaccttaatg
gagctgcttagtgacaagaacgagagactaggatacctagaaggtgtggatcaactacta
agtcaaaaaggagtttttaatgataaagcacaggtcactttcatcacgggcgatgctggg
actggcaaatctatattgcttcaacagtcacagagtctctggtccaaaggtgaactggac
acaggggcgaggttcctcttcgcattctcctgcagacagttcagtgcattccaagagtcg
gataagatttctctttgggatctcatcttcaagcataactacacatgcccagatggagat
atgagaaacaacgttgttgaatacatccttaagaacccagagatggcgatctttacattt
gacggatatgatgagatcaacagtaattttgatcagggaaccgactatgagatatcctca
cctgaggagacagcacatccattagtgttgctgaagagcctactcagcgggaagttactc
aatgggtcgcagaaggttgtgacagctcgaactggcacagaattcctgagtatgttggtt
cgaaagagggtaattctaaaaggcttctcaattgatcagttgcagaagtacactgacaaa
tattcccaaggaaatgaggatcagaagctggttagtgtccaaataaactctaaccacctc
ctccaaagcctctgcctaattcctctgttctgctggattgtctttgagagttgcagtcaa
tcggtggagatcttgaaaactttggatcatggtgtgaccctaaccagtatcttcatggac
ttggtcagggctttctttagccgctcaaatctcaacatatacacagaggctggcagttgg
aagcttagagcttttgcgaagttggcccatctcgggatggagaaagaaaagtttgtgctc
aactatgatcatttatcctcttgtggtattggagaaaatgacttaaaggtggggatctta
ataccagcaagctattatgataatggcaaaactgcaacatttcagttcatgcatctcact
ctccagtctttcctcactgctctccatcttgtgctagaagaacagatgagtacaagaggc
attttgcaattctttccacagttgcagagtcagcactttcttcatttgccatggagaggg
ggatcaaaatctcagactaagagcagttctcagaccaacgagcatcatcattacaccaat
ctcttcttgtgcggtctgctttccaagcaaaacaatgacctgcaagagcccttaatgtct
ctacctttgttgagaaagaaacaagagcttctcttttctttcctctcagataatgtgaag
ttgaatttcagaaatttacccctggacaaaatcgatgacgggattgcagtgcgactgaca
cacgacatgctacggatgctaaggtacatctttgaaacaaggagtgacaagctggccaag
ttggctgccaaaggcttctctgctcaggtcattaagctcacatactgtaaagtagactcc
tttgactgtgaagtgctcgcctttgtactgcagtatcaaaaggaattctactgtataaac
ctggataacaacaacatttcagactatggcattcggcagctaaaaccattgttcagtaac
ctgaccaccttaaggctttgtgacaatcaaatccaagatgagggtgtggctatatttaca
aatgaatttctgaagtacaaagcgttaaagggactcacacttttcaccaatcatatcact
gacattggagcaaaacacattgcaaggattattgaagagtgcccccatttccgacggctt
gcacttggaaacaacagaattaccggtgagggagggaggtacttggctaatgcgattcaa
aggagcaaagccatctactatgtgggcatgtggggtaacaaaattggagatgaaggagct
aaacactttgcagaggccataagaaaccatcccaatttgtcagctgtgagccttgccgcc
aatggaataacattcagtggagggagaagtctggctgctgcactcaaagagaacacagtt
ctcaagagtctctggttgcatgacaatgagttgacagacgataatgcagcagattttgct
gaagtaataaggtccagtacaacaatacatcaactctggttcataaacaacaagatgacg
gtgaatggagtcaggctactggccagttcccttcaatacaacccatcaattacaatgttg
tgcatgaaggataacctgctttctgccgaggaagtgaaggagtttgagaacgagaccaga
atggtcttctga
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integrated database retrieval system
