Salmo trutta (river trout): 115165622
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Entry
115165622 CDS
T08542
Name
(RefSeq) ATP-dependent RNA helicase DDX19A-like isoform X1
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115165622
03015 mRNA surveillance pathway
115165622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115165622
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115165622
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115165622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
DUF1028
Motif
Other DBs
NCBI-GeneID:
115165622
NCBI-ProteinID:
XP_029574711
Ensembl:
ENSSTUG00000035452
LinkDB
All DBs
Position
28:complement(16312537..16326738)
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AA seq
490 aa
AA seq
DB search
MATDSWALAVDKQESTTDSFGSLVIRSPPRGGGDAAPRKAKGTTKQVENGTEGEEKEDKA
AQSLLNKMIHTSLVNTTNQVEVLQRDPNSPLYSVKTFEELRLKDELLRGVYDMGFNRPSK
IQENALPMMLAEPVYYPSGSRPQNLIAQSQSGTGKTAAFALAMLSHVDPANKWTQCLCIA
PTYELALQTGKVIEQMGKFYPEVKLAYAIRGNKLDRETKLQEQIVIGTPGTVLDWCSKLK
IIDPKKISVFVLDEADVMIATQGHQDQSIRIQRMLPNECQMLLFSATFEDSVWKFAERVV
PDPNIIKLKREEETLDTIKQYYVLCNDKDEKFTALCNIYGAITIAQAMIFCHTRRTAGWL
SAELTKEGHVVALLSGEMTVEQRAAIIERFREGKEKVLVTTNVCSRGIDVEQVSVVINFD
LPMDKDGNADNETYLHRIGRTGRFGKRGLAVNMIDSKQSMNILNQIEEHFNKKINKLDSD
DLDEIEKISN
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggctactgactcctgggctctggctgtcgataaacaggaatctacgactgactctttc
ggctccttggtgataagatctccacctcgaggtggaggtgatgctgcacctagaaaggca
aaaggtactacaaaacaagtggagaatggcaccgaaggggaagaaaaagaggacaaagca
gcccagtcgttgttgaataagatgatccacaccagccttgtgaacacaaccaatcaagta
gaggttcttcagagggatccgaactctcctctttactcggtcaagacatttgaagagctg
agactgaaagatgagctgctaagaggagtgtatgacatgggtttcaacagaccctctaag
atccaggagaatgccctgcccatgatgctggcagagcccgtgtattatccctctggttcc
agacctcagaacctgattgcccaatcacagtccggcacaggtaaaacagctgcctttgca
ctggccatgctcagccatgttgacccagctaacaaatggactcagtgtctttgcattgcc
ccaacatacgagctagctttgcagactggtaaagtcattgaacagatggggaaattctat
cctgaggtcaaattggcatatgccattcgtggcaataaattggaccgagagacaaagctt
caggagcaaattgtcatcgggacacctggcacggtcctagactggtgctccaaactgaag
atcatcgaccccaagaagatcagcgtcttcgtcctggacgaggctgacgtcatgattgcc
acacaaggtcaccaggaccagagcatccggatccaaagaatgttaccaaatgaatgtcag
atgctgctgttttcagccacgtttgaggactcagtctggaagtttgccgagagagttgtg
ccagaccccaacatcatcaagctgaaacgtgaagaggagactctggacaccatcaagcag
tattacgtgctctgcaatgataaggacgagaagttcacagccctttgtaatatctacgga
gccatcaccatcgcccaggctatgatcttctgtcacacccgaaggacagctggctggctg
tctgctgagctgaccaaagagggccatgtggtggcactgctgagtggggagatgactgtt
gagcagagagcggccatcattgaacgcttcagggagggcaaagagaaagtcctagtgacc
accaatgtatgctccagaggcattgatgttgagcaagtttccgtggtgatcaactttgac
ctgcccatggacaaagacggaaacgctgacaacgagacataccttcaccggattggccgc
acaggacgtttcggcaagagggggcttgccgtcaatatgattgacagcaaacagagcatg
aacattctcaaccaaatcgaggagcatttcaataagaagataaacaaacttgacagtgac
gatctggatgaaatcgagaaaatcagcaactga
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