Salmo trutta (river trout): 115166193
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Entry
115166193 CDS
T08542
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04510
Focal adhesion
stru04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115166193
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115166193
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
stru00536
]
115166193
Glycosaminoglycan binding proteins [BR:
stru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115166193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
115166193
NCBI-ProteinID:
XP_029575826
LinkDB
All DBs
Position
28:39214056..39243698
Genome browser
AA seq
1489 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLISIARCQGEDDQAAGSCIQDAHRYNDKDVWKPEPCRICVC
DSGSVLCDEIICEEIRECANPIIQPRECCPICPADASAPTEAVIGAKGQKGEPGEIADVV
GPNGPAGPMGPSGEQGPRGEAGAKGDKGNVGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPA
GALGPQGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLD
GAKGEGGAAGAKGEGGAPGENGAPGPMGPRGLPGERGRPGPSGSAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPV
GPQGGPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GVGGPKGGTGDPGRAGEPGLPGARGLTGRPGDAGPQGKVGPGGSAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGANGEPGKAGEKGLVGRQGLIGLSGKDGETGAAGPNGPAGPAGERGEQ
GAAGPSGFQGLPGPAGPPGEGGKPGDAGVPGEAGAAGVTGPRGERGFPGERGGAGTQGLQ
GPRGLPGTPGTDGPKGAIGPTGGAGSQGPPGLQGMPGERGAGGILGAKGDRGDNGEKGPE
GAPGKDGSRGLSGPIGPPGPAGPNGVKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFA
GPPGADGQPGAKGEFGEAGQKGDGGAPGPQGPSGAPGPVGPTGVSGSKGARGAQGGAGAT
GFPGAAGRVGSPGPNGNPGAAGPAGPAGKDGPKGVRGDAGTPGRQGDAGLRGVAGAPGEK
GDAGEDGPPGPDGPSGPHGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGAGGDR
GPPGPVGPPGLSGPAGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAP
GPVGPLGKQGDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFT
GLQGLPGPPGSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGTPGPLGPSGPRGRSGET
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVD
STLKSLNYQIENLRSPDGSQKNPARTCRDIKLSHPEWKSGDYWVDPNIGSTADAIKVFCN
METGETCVYPSIANVPHKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFL
RLLSTEASQNLTYHCKDSVAYMDASTGNLKKALLLQGSNDVEIRAEGNSRFTYSVVEDGC
KKHTGQWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta
atatccattgccagatgccagggagaggatgaccaggcggcaggcagctgcatccaggat
gcccatcgctataacgataaggatgtgtggaagccggagccgtgtcgtatctgtgtgtgt
gacagcgggtcagtgctgtgtgacgagatcatctgcgaggagatcagagagtgtgccaac
cccatcatccaacctagagagtgctgccccatctgccctgcggacgccagcgcccccact
gaggcggtgattggtgctaagggccagaaaggggaaccaggcgagattgcagatgttgta
ggaccgaacggaccagcaggccctatgggcccctcgggcgagcagggaccacgtggagaa
gctggagctaagggggataagggaaatgttggccccagaggcagagatggcgagcctgga
acccccgggaaccccggaccccctggccctccaggacccaacggacccccaggtcttggc
gggaacttcgctgctcagatggccggtggattcgatgagaaagctggaggcgcacagatg
ggagtgatgcaaggacctatgggccctatgggtccccgtggtccacctggcccttctgga
gcccctggcccacaaggtttccaaggtaaccccggagagactggagagccaggccctgct
ggtgcactgggaccccaaggaccccctggaccttctggcaaaccaggaagtgatggtgag
gctggcaaacctggaaaggctggtgaacgtggacctgcaggacctcagggagctcgtgga
ttccccggaactcctggtcttcccggaatcaaaggacacagaggtcatcctggtcttgat
ggagctaagggagagggtggtgctgccggagccaagggtgagggtggcgctcccggagag
aatggcgcccctggaccaatgggaccacgtggtctgcccggcgagagaggccgtcccgga
ccttctggctctgctggtgcccgtggtaatgatggcttgcctggccctgctggtcctcct
gggcctgttggacctgctggagcacctggtttccctggatcccctggttccaagggagaa
gctggccccactggtgcccgtggagctgaaggcgcacagggaccccgcggagaggctggc
acacccggatctcccggtcccgctggcgcctctggcaaccctggtactgatggtatcccc
ggagctaaaggatctgctggcgcttctggtattgctggtgcacctggtttcccaggaccc
cgtggcccccctggacctcagggagcaacaggacctcttgggcccaagggccagtcggga
gaccccggtattcctggtttcaaaggagaggctggacccaagggagagcttggccctgtt
ggtccccaaggcggccctggccccgctggcgaggagggcaaaagaggagcaagaggagag
ccgggtgctgctggaccacttggacctcctggcgagagaggagctcccggtaaccgtggt
ttcccgggtcaggatggtcttgctggtgctaagggagcccctggtgaccgtggtgttccc
ggcgtgggtgggcctaagggaggcactggtgaccccggccgcgcaggagagcctggtctt
cccggagccagaggtctcactggtcgccctggagatgctggtcctcaaggcaaagttggt
cctggtggttctgctggtgaggacggtcgccccggcccacctggtcctcagggagcacgt
ggccagcctggtgtgatgggattccccggaccaaagggagccaatggtgagcctggcaag
gcaggagagaagggtcttgtgggtcgtcaaggtctgataggtctgtctggtaaagatggt
gagactggcgctgctggacctaacggccctgctggacctgctggagagagaggagagcag
ggagctgctgggccatctggcttccagggtctgcctggacctgctggccccccgggagag
ggaggcaagcctggtgatgcgggtgttcctggagaggctggtgctgctggcgttacggga
cccagaggcgagcgtggtttccctggtgagaggggcggtgcaggaactcagggtctgcag
ggacctcgtggacttcctggaactcccggaaccgatggacccaagggagccattgggcca
actggtggtgctggatctcagggaccccccggcctgcagggtatgccaggagagagagga
gctggcggtatcctcggagccaaaggtgacagaggtgacaatggcgagaaaggacctgag
ggcgctcctggaaaggacggttctagaggtttgtctggtcccattggtcctcctggccca
gctggtcccaacggcgtgaagggtgagggtggaccttctggcccaactggtgctgctggt
gcccgtggtgctcctggtgaccgtggtgagggtggtcctcctgggcctgctggcttcgct
gggcctcctggtgcagatggtcagcctggagccaagggagagtttggcgaggctggacag
aagggagatggtggtgcccctggacctcagggaccctctggggcccctggacctgtgggt
cccactggtgtttctggatctaaaggagcccgtggtgcccagggtggcgctggtgctact
ggtttccctggtgctgctggaagagttggatctcccggtcccaacggtaaccctggcgct
gctggccccgctggtcctgctggtaaagacggtcctaagggagttcgcggtgacgctggc
accccaggaagacagggagacgccgggctgcgtggagttgccggagcccctggcgagaag
ggagatgctggagaagatggtccccctggtcctgatggtccttcaggtccccatggtctg
gctgggtctcgtggtattgttggtctgcctgggcagcgtggagagaggggcttcccaggc
cttcctggaccttctggagagcccggtaagcagggagcttctggtgctggtggtgaccgt
ggaccgcctggccctgtgggaccccctggactgtctggacctgcaggagagcccggaaga
gagggcaatgctggatctgatggaccccctggtagagatggatccactggagtcaagggt
gagcgtggtaacactggccctgctggtgctcctggtgccccaggtgctcccggtgccccc
ggccctgtcggccccctgggcaagcagggagacagaggagagggaggtgctcaaggacct
gccggacccgctggaccagctggcgctagaggaatggctggaccccaaggaccccgtgga
gacaagggagaggctggcgagacaggagagaggggacagaagggacaccgtggcttcact
ggtctgcagggtcttccaggacctcccggctccgctggagaccagggagctgctggacct
gccggacctagtggcgctaaaggaccccctggcccagtcggtcccgctggtaaggatgga
tctaatggtacccctggacccctcggaccctctgggcctcgtggtcgttctggagagact
ggtcctgctggtcctcctggtaaccccggaccccctggtcctcctggtcctcccggccct
ggcatcgacatgtctgccttcgctggcctgtctcagcctgagaagtctccggatcccttg
aggtacatgagggctgatgaggcatccagctccctgaggcagcacgacgtagaggtggac
tccacactcaagtccctcaactaccagatcgagaacctgcgcagccccgacggtagccag
aagaaccccgcccgcacctgcagagacatcaaactgtcccaccccgagtggaagagtggt
gactactgggtggatcctaacattggcagcacagctgacgccatcaaagtcttctgcaac
atggagactggcgagacctgtgtgtatcccagcatagccaatgtaccgcacaagaactgg
tggacaagcaagagcaaggaccgcaaacacgtctggttcggagagaccatgaacggagga
ttccacttcagctacgctgaggacggtaccaacgccgccagtatccagctgaccttcttg
aggctgctgtccacggaagcgtctcagaacctcacctaccactgcaaggacagcgtggct
tacatggacgcgtccactggcaacctgaagaaggctctgctgctccagggctccaacgac
gtggagatcagagctgagggcaacagccgcttcacttacagcgtggtggaggacggctgc
aagaaacacacaggccagtggggcaagactgtcttcgagtacaaaacacagaagacctcc
cgtctgcccatcgtggacattgctcccatggacatcggaggagcggaccaggagttcggt
gtggacgtgggcgcagtctgcttcttgtaa
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