Salmo trutta (river trout): 115166630
Help
Entry
115166630 CDS
T08542
Name
(RefSeq) synaptopodin-like
KO
K21112
synaptopodin
Organism
stru
Salmo trutta (river trout)
Pathway
stru04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
115166630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
115166630
NCBI-ProteinID:
XP_029576257
Ensembl:
ENSSTUG00000036283
UniProt:
A0A674CGH5
LinkDB
All DBs
Position
3:complement(4222042..4281125)
Genome browser
AA seq
1152 aa
AA seq
DB search
METERGHMSVRRGVSWSPGGGRKPLQGGQGKDVDTGNRESDASWERRDYRGIKGQLTSTS
TNQLARKTNLTRSASLSEKELKEARVRSQIIAAQLTVPSGCSNSRGVQLFNRRQQRVNAF
TLESCGERTREEEREARDGNTRNNNLTWEEERGGPSEGTEKDVQLNWKNSVGTKQPLWSP
PSGSEVTGSDIMKDPGDEHIYEEVETVTQERHFQPVNERQGEEEERSGEREREEIYEDIE
GEVKDEIIPVNDNNTGPVREEVGMNRGSYTYSKAPPETRNGFHSTQGSAGEIQNGGRISM
SLSRQAPTIVNRTARPFFSPPTVQPKSPEARSPVMDNNIPPAPSYPTPTLPPASSDSTRP
LPPFTATRTVAFSPPPPPPSYPMPPLPAFPIHPPPPSQSLSSPPPMSTVMFPRSTPVPQY
NPPSTAASVAQYLPPNPPVTHNIPPPGSPRPNTFVPFTPQPIGQQNQQQLIKTGILEEGA
AAIRRSSTARKSMFTFKEKSVMAPNPELLSLVQGNDDRKKHGLRSVPDPAPEEELLALGA
EASNFLAREEVKAEAANVPEWSSCLKSSRTREPRGQHQPEQTLTNASGKGAELFAKRQSR
MEKYVVENQNVSGGGGGQMRSPSPTASLPPSWVYPSNMPGRVKAIANNTDLSARLTRTLQ
TPQPANRRPSQQASTQAPVLAEPPLENGCTKLEMDLSRHQPYQLNSSLFIFNPVQDSTST
LLSALPRGAPQPPKPLVSSEAYSRQASLPSSNPPSHNYNSLPRFRPTLSPSLQPPLGGIG
GGDYYPSQQGGTPQLRDTRITSPVSAFSPERVASPRSSVQAPRPTFSAKRAGIEPQTRKE
SPPTPTHTTPTPTRTPQFTRRFSSPEGPPTPSGVRPPTPQTTITTSSSSRPPHQGTSTPT
SPVSPPWETRCQSPAVVNQTTKPFSTASLSRPKPSTTTSPISPVSPWGSRCQSPNINQTT
KPFSTIISNSSSSRPSHQGTITSPLSPSPLSPPWGSRCQSPIVSPSPNNSKANHRLLAKN
IINAAKRKNSPSPGALSGHNLPISPLGGITTHQHHQGYDHSSSSSKPPFSPYQSRAMGCQ
SPPFASPPPTPTGVIRSPVRLYNTRSLTDSDASVESEDSGLRSPGLQRTHNTSPRGWGGS
LRVKRGSFGTDL
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggagacggagaggggtcatatgtctgtgaggaggggggtaagctggagcccaggtggg
gggaggaagccccttcagggggggcagggcaaggatgtggacaccggcaacagagagagc
gatgcatcttgggagaggcgggactacagagggatcaaaggacagctgacatcgacctcc
accaatcagctggctcggaaaaccaacctgacacgtagtgccagcctatcagagaaggag
ttgaaggaggcaagggtgaggtcacagatcatcgctgcccagctgaccgtcccgtctggc
tgctccaactcccgcggagtccagctcttcaaccgccgccagcagagagtcaacgccttc
acgctagagagctgcggggaaagaacaagggaagaggagcgagaggcgagagacggaaat
accaggaacaacaacctgacatgggaagaagagagagggggacctagtgaggggacagag
aaagacgtacaactgaactggaagaacagcgttggaacaaaacaaccactttggtcgcca
ccctctggaagtgaggtcaccggaagtgacatcatgaaggacccaggtgacgagcacatc
tacgaggaagtggaaactgtgacacaggagagacactttcagccggtgaacgagagacaa
ggggaggaggaagagaggagtggagagagagaaagagaggagatatatgaggatattgaa
ggtgaagtgaaggatgagattataccagtaaatgacaacaacactggtccagtcagagag
gaagtggggatgaataggggatcatacacatactccaaagctccccctgagacccgtaat
ggcttccacagcactcagggctctgctggagagatccagaatggaggccgaatttctatg
tccctgtccagacaggcccccaccattgtcaaccggacagccagaccattcttctccccg
cccaccgtacagcccaagtcccccgaggcaaggagtcccgtcatggataacaacatacct
ccagccccctcctatcctaccccaactcttcctccagcttcctcagactccactcgccct
ctccctcctttcactgccactcgcaccgtagccttctcccctcctccccctcctccctca
taccccatgcctcctctcccagccttccccatccatcctcctcctccctcccagtctctc
tccagtcctccacccatgtctaccgtcatgttccctaggtctacacccgtcccccagtac
aaccctccttctacagctgcttcagttgcccagtatctaccccccaaccctcctgtcacc
cacaacatccctcctccaggttcccctagacccaacacctttgtccccttcacccctcag
cctattggtcaacagaaccagcagcagctaatcaaaacgggcatcctggaggaaggggcg
gcggccatcagacgatcgtcgacggccaggaagtccatgttcacctttaaggagaagtct
gtcatggcacccaaccctgaactcctctctctggtccaggggaacgatgataggaagaag
cacggcctccgctccgttcccgacccagccccagaggaggagctgctggctctgggggcc
gaggcctctaacttcctagccagggaggaggtgaaggcggaggctgccaacgtgccggag
tggtcctcctgtctcaagagctccaggaccagggagcccagggggcagcaccagccagag
cagaccctgaccaacgcatcagggaagggggccgagcttttcgctaagcgccagtccagg
atggagaagtacgtagtggagaaccagaatgtctctggtggtggaggtggtcagatgagg
tctccgtctcccaccgcgtctctgccgccgtcttgggtctatccatctaatatgcctggc
cgggtcaaagctatcgctaacaacactgacctcagcgccaggctgacccggaccctccag
acccctcagcccgcgaacaggaggcccagccagcaggcttcaacccaggccccggtcctc
gcagaaccacccctggagaacggctgcaccaagctagagatggacctctccaggcaccaa
ccctaccagctcaactcctccctgttcatcttcaacccagtccaggactctaccagcacc
ctgctgagcgctctgccccgaggggcccctcaaccacccaaacccctggtctcatctgag
gcctactccaggcaggcctccctgccttcctccaaccctccatcacacaactacaacagc
ctgccccggttcaggcctaccctgtccccctcacttcagcccccattaggaggaattgga
ggtggggattactatccttcacaacaaggggggactccacagctgagggacaccaggatc
acctctcctgtctctgccttctctccggagagagtggcctctcctcggtcgagcgtccag
gcacccagacccaccttctctgccaagagggcagggatcgaaccccagacgaggaaggag
tcgcctccaaccccgacccacaccacccccactcccaccaggacaccccagttcacccgt
cggttcagcagcccagagggaccccccactcccagtggggtccggccccctaccccccag
accaccatcaccacctcctcctcttccaggcccccccaccagggcacctccacacccacc
tcccctgtttccccaccctgggagacgaggtgccagtcccctgcggtggtcaaccagacc
accaaacccttctccacagcctctttatccagacctaaaccatccactaccacctcacct
atatcgcctgtatctccctgggggtcccgctgtcaatcccctaacatcaaccagacaacc
aagcctttctccaccatcatctccaactcttcctcttccagaccctctcaccaaggcacc
attacctctcctctctccccctcacccctgtcccctccctggggttccagatgccagtct
cccattgtcagccccagccccaacaactccaaggcaaaccatcgcctgttagccaagaac
atcatcaacgcggccaaacgtaaaaacagcccgtccccaggtgctctgagcggccacaat
ctcccaatctccccactaggtggcatcactacccaccagcaccaccagggctatgaccac
agtagcagcagctccaaaccccccttcagcccctaccagtccagggccatggggtgccag
tccccccccttcgccagccctcctcccacccctacaggagtgatccggtccccagtaagg
ctctacaacaccaggtccctcactgactcggatgcttcggtggagtcggaagactctggg
ctgaggtctccaggactgcagcgtacccacaacaccagtccccggggctggggcggcagc
ctgagggtgaagaggggcagttttggcaccgacctgtag
DBGET
integrated database retrieval system
