Salmo trutta (river trout): 115166830
Help
Entry
115166830 CDS
T08542
Name
(RefSeq) paired amphipathic helix protein Sin3a-like isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
stru
Salmo trutta (river trout)
Pathway
stru04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
115166830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
stru03036
]
115166830
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
115166830
REST complex
115166830
Heterochromatin formation proteins
Other heterochromatin formation proteins
115166830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
Motif
Other DBs
NCBI-GeneID:
115166830
NCBI-ProteinID:
XP_029576556
Ensembl:
ENSSTUG00000043955
LinkDB
All DBs
Position
29:complement(6858628..6878429)
Genome browser
AA seq
1301 aa
AA seq
DB search
MKRRAEDQEPVFASQQQRRPPVPGTAEGFQHRVLAPAVYEAGTDNMQPSPGIQYSIPQGY
QVPTMPQNSSGHGHASSPAALVGPHPHSPAVQSQGAAVVQSHAHPLAPMAPSQGAQFQRL
KVEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMG
FNTFLPPGYKIEVQTNEQVNVTTPGQIHYITPHGISVQNLPVTGPPSQPVPHHHQALQPP
SGPPTSTATATASTTLPTQPTPAKTSKPMQSPALTPTSQPNPSIPSYASPRSPSVQSHAP
VSSTPSSGPPLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEA
GGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPDANSSVSCPPFLQLLSKTTADRAE
SVRNDHGTTVKRPLMNNKQRLNQNGCPIRRHSGAGATPPIKKKPKMLVKDHAMSEASKHS
IGTESLFFEKVRKALRSSEAYDNFLRCLLIFNQEVISRAELVQLVLPFLGKFPELFSWFK
NFLGYRESSHIESFPKERTTEGMAMEIDYASCKRLGSSYRALPKSYTQPKCTGRTPLCKE
VLNDTWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDVVLETNLATIRALEAVQRR
LSRLTAEEQVKFRLDNTMGGCSEVIHRKAIQRIYGDKAADIIDGLKRNPAVSVPIVLKRL
KMKEEEWREAQRGFNKIWREQNEKYYLKSLDHQGINFKQNDTKVFRSKTLLNEIETIYDE
RQEQASEDTTTVPGGPHMTLTYQDSQILEDAAALIIHHVKRQAGIQKEDKYKIKQVIHHF
IPDMLFARRGELSDVEEEEDEEEEEEEDETGPDEDGSKKHNGLAGSGGSAKSKLLFGNTG
AQKLRGLDEVYNLYYVNNNWYIFQRLHQILCLRLLRIYGQAERQIEEDCREREWEREVLG
VKRDKSENPAVQLRLKEPMDIEVEDYYSAFLEMVRNLLDGNMEPTQYEDSLREMFTIHAY
TAFTMDKLIQSIVRQLQHIVSDELCVRVTDLYLSQSTNKATGGALSTQASRATAEGAYQH
KAEQLMSDENCFKLMFVKSQGSVTLTLELLDTEEENSDEPAETERWCDYVGRYLNSDSAS
PELREHLAQKPVFLPRNLRRIRKCQRGWEQLQQAKAATGTLEKSHSAEDLKMECMFKLNS
YKMVYVFKSEDYMYRRTALTRAHQSHQRVHTRLHRRFQGLVDTWAKEHVTSDMATDTRKW
LMGERREGLLPCTTTRDPQVLYYLNINRYHVTYHGSSSGAP
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcgtgcggaggatcaggaaccagtatttgcgtctcagcagcagcgtcgcccc
ccagtcccgggtactgcggagggcttccagcaccgcgtcctagccccagccgtgtacgag
gccggcaccgacaacatgcagccttcccccggcatccaatactccatcccccagggttac
caggttcccacaatgccccagaactccagtggccatggacatgcctctagtcccgctgca
cttgtcgggccccacccccacagtccagctgtccaatcacagggggctgcggtggtccag
agccatgcccatcctttggcccctatggccccctcacagggtgcccagttccagcgactc
aaggttgaagatgctctgtcctacctggaccaagtgaaactgcagtttgggaatcagcct
caagtctacaacgacttccttgacatcatgaaagagttcaagtcacagagcatcgacact
ccgggcgtgatcagccgtgtctcccagctcttcaagggccacccagacctcatcatggga
ttcaacaccttcctgccgcctggctacaagatcgaggtccagaccaacgagcaggtcaac
gtgaccacgccaggtcagatccactacatcaccccgcacggaatttcggtccagaacctc
cctgttacggggccacccagccagccggtgccccatcatcaccaggccctgcagccgccc
agtggaccccccaccagcaccgccacagccacagccagcaccactctacccacccagcct
acaccggccaagaccagcaagccgatgcagtctcctgccctgaccccgactagccaaccc
aacccgtcaatcccatcctacgcctccccacggtccccctcggtccagtcccacgccccg
gtgagcagcaccccttccagcgggcctcccctgcagaacaaccagcccgtagagttcaac
cacgccatcaactacgtcaacaagatcaagaaccgcttccaggggcagcccgacatctac
aaagccttcttggagatcctgcacacttaccagaaggagcagcgaaacgcgaaggaggcg
gggggcaactacaccccagcattgacagagcaggaggtgtacgctcaggtggcacggctc
ttcaagaaccaggaggacctgctctcggagttcggccagttcttaccggacgccaacagt
tcagtgagttgtcccccttttctccagctgctgagcaagaccacggccgaccgggcggag
tcggtgcgcaacgaccacggcaccacggtcaagaggcccctgatgaacaacaagcagcgg
cttaaccagaacggctgtccaatccggaggcattctggagcgggcgccacgcctcccatc
aagaagaaacccaagatgctggtgaaagaccatgccatgtctgaggccagcaaacatagc
atcggcacagaatctctcttctttgaaaaggtgaggaaagccctccggagctctgaggcc
tatgacaacttcctgcggtgtctgctcatctttaaccaggaagtgatttctcgtgcagag
cttgtgcagctagtgctaccgttcctgggaaaattcccagagctgttctcctggttcaaa
aacttcctgggctacagagagtccagccacatcgagagctttcccaaggagaggaccaca
gagggcatggccatggagattgactacgcttcctgtaagaggttgggctccagctacagg
gcgctacccaagagctacacacagcccaagtgtacagggaggaccccactgtgtaaagag
gtcctaaatgacacgtgggtatcgttcccttcgtggtcagaggattccacctttgtcagc
tccaagaagacccagtatgaggagcatatttacagatgtgaggacgagcgtttcgagctg
gacgtggtgctggagaccaacctggccaccataagagctctggaggcggtacagaggagg
ctgtcgcgcttgacggccgaggagcaggtcaagttccggctggacaacaccatgggcggc
tgctccgaggtcatccaccgcaaggccatccagaggatatacggcgacaaggccgccgac
atcatcgacgggctcaagaggaacccggctgtgtccgtccctatagtactcaagaggtta
aagatgaaagaagaagaatggagggaagcccagagaggattcaacaagatctggagggag
cagaatgagaagtattacctcaagtccctcgaccaccaaggtatcaacttcaagcagaat
gacaccaaggtgttccgctcaaagaccttgctcaatgagattgagaccatatacgatgag
cgacaggaacaggcttccgaggacacgaccaccgtgcctggcgggccccacatgaccctg
acctaccaggacagtcagatcctggaggacgccgcagcgctcatcatccaccacgtcaag
aggcaggccggcatccagaaggaggacaagtacaagatcaaacaggtcatccaccacttt
atcccagacatgctgttcgcccggcgcggggagctgtcggatgtggaggaagaggaagac
gaggaggaggaggaggaagaagacgaaaccgggccagatgaagacgggtcaaagaagcat
aacgggttggccggcagtggcggctccgctaagtctaagctgcttttcggcaacacgggg
gcgcagaaactgcgtggcctagacgaagtctacaacctctactacgtcaacaacaactgg
tacatcttccagcgcctgcaccagatcctctgtttgcggttgttgcgcatctatgggcag
gcagagaggcagatcgaggaggactgcagggaacgggagtgggagagggaggtgctgggc
gtcaaacgggataagagtgagaatcctgccgtccagctgagactaaaggagcccatggac
attgaagtggaggactactactctgccttcctggagatggtgcggaacctcctggacggt
aacatggagcccacccagtacgaggactccctcagggagatgttcaccatccacgcctac
accgccttcaccatggacaagctcatccagagcattgtcagacagctccagcacattgtg
agtgatgagctctgcgtgcgcgtgacagacctctacctgagccagagcaccaacaaggcc
accggcggcgccctgtccacccaggcctccagagcgaccgccgagggggcataccagcac
aaggcggagcagctcatgtccgacgaaaactgcttcaagctgatgtttgtgaagagccaa
ggcagcgtgaccctgaccctggagctgcttgacacggaggaggagaactcagacgaaccc
gctgagacagagcggtggtgcgactacgtgggacgctacctgaactcggactcagcgtct
ccagagctgcgtgagcacctggcccaaaagcctgtgttcctccccagaaacctccggcgg
atacggaagtgccagagagggtgggagcagctgcagcaggcgaaggcggctacggggacg
ttggagaagtcccacagcgctgaggacctgaagatggagtgcatgttcaaactcaactcc
tacaagatggtgtacgtgttcaagtcggaggactacatgtacagacgcactgcgttgacc
cgggctcaccagtcccaccagagagtccacactcgcctgcaccgccgcttccaaggcttg
gtggacacctgggccaaggaacacgtgaccagcgacatggccaccgacacccgcaagtgg
ctgatgggagagcgtcgcgagggtctgttgccgtgcaccaccacccgggatccccaggtc
ctctattacctgaacatcaacagataccatgtgacgtatcatggcagctcgtcaggggca
ccttag
DBGET
integrated database retrieval system
