Salmo trutta (river trout): 115167268
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Entry
115167268 CDS
T08542
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115167268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115167268
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115167268
Spliceosome [BR:
stru03041
]
Complex C
Other components
Step II factors
115167268
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
Toxin_trans_Wo
T2SSE
nSTAND3
nSTAND_NTPase5
Sigma54_activ_2
AAA_30
AAA_16
Flavi_DEAD
PhoH
AAA_7
Motif
Other DBs
NCBI-GeneID:
115167268
NCBI-ProteinID:
XP_029577373
LinkDB
All DBs
Position
29:complement(27205398..27228453)
Genome browser
AA seq
1264 aa
AA seq
DB search
MEDDASLHRLEGSDLTAQVGGLIVKKKSAAVEPHVFRAPTPRTSLLGLDLLAAQKRKERE
GKEQAEADSDDRNNKKSKVSSYKDWEEGKSDSGSDEEDKDEEDQGGKKESSRKYRVTGSE
TPSNPGGVSEEFRRKHQQREKDRREHGMYASSKEDKNREREKDRERIRDTDRDQSGERDE
RERSHSRGGGSSRSERGDRSERSERSQREGWSSERISRGSKREEPPTPQTRPKDGTPSRT
SWDEDDSGYASSRRSHWESPSPAPSHKDSDKSERSERSPRTGRESERKDKSVRGRYPDDT
PLPTPSYKYNEWANDRKHLGSTPRLSRGKGKNEGENGITFDNDDEKQQWEEDQKQADRDW
YMMDEGYDEFHNPLTSTSEDYVKKREQILQKQTQKRISAQRRQINEDNERWETNRMLTSG
VVQRLEVDDDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRK
GSQLVRKHREQKERKKAQQKHWELAGTKLGDIMGIKKTEDGDSSGGKPVGEDGKVDYRTD
QKFADHMKDKSEASSEFAKKKTLLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKT
TQLTQYLHEDGYTSYGMVGCTQPRRVAAMSVAKRVSEELGSNLGEEVGYAIRFEDCTSEK
TVIKYMTDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRSDLKLIV
TSATMDSDKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMGGD
ILIFMPGQEDIEVTSDQIVERLEDLESAPPLTVLPIYSQLPSDLQAKIFQKAPDGVRKCI
VATNIAETSLTVDGIMFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRAGRAGRTGP
GQCYRLYTQSAFKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLN
SMYQLWILGALDNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPA
IFYRPKGREEESDQVREKFSVPESDHLTYLNVYLQWKNNNYSSIWCNEHFIHTKAMRKVR
EVRSQLKDIMVQQRMNLVSCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLH
PTSSLFGMGYTPDYITYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRMENR
RRAKEEITNMEEEMSLAEQQLRSRREDQNRKSNVGTVRAVKICTPGRKEEAPMTPKRTPA
RFGL
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgatgcgtcactgcatcgactggagggcagtgacctcactgcgcaggttggc
gggctgattgtgaagaagaagagtgcagcagtagagcctcatgtctttcgtgcacccact
ccacgcacctctctcctgggcctggatctgctggcagctcaaaagagaaaggagcgtgag
ggcaaggagcaggctgaggctgacagtgatgacaggaataacaagaaatccaaggtatcc
tcctacaaggattgggaggaagggaaaagtgattctgggtctgatgaagaagacaaagac
gaggaggaccagggtggtaaaaaagagagcagcaggaagtaccgtgtgactggctcagag
acaccctctaaccctggaggagtcagtgaagagttccgtcgcaaacaccagcagagggag
aaagaccggcgtgagcatggaatgtacgcctcctccaaagaggacaagaacagagagagg
gagaaggacagagagaggatcagagatacagacagagatcaaagtggtgaaagagatgag
cgggagcgcagtcacagccgcggcggcggcagcagccggtcggagcgtggagaccgcagt
gagaggagtgagcgctcacagagagaaggctggtcctccgaacgcatcagccgggggagc
aagagagaggagcctccaacgccccagacacgccccaaagatggcactccctcgcgcacc
agctgggatgaggatgacagcggctatgccagctcacgccgttcccactgggaatctccc
tctcctgccccttcacacaaggattctgacaagtctgaacggtcggagcgcagcccccgc
actggacgggagagtgagaggaaggacaagtcagtcagaggccggtatcctgatgacaca
ccccttcccaccccatcatacaagtacaacgaatgggccaatgacaggaagcacttgggc
tccactcctcgtctgtcccgtgggaaaggtaagaatgaaggagagaatggcatcaccttt
gataatgatgatgagaagcagcagtgggaggaggaccaaaagcaagcggacagagactgg
tacatgatggacgaaggctatgacgagttccacaacccactgacctccacctctgaggat
tacgtgaagaaaagagagcagatcctgcagaagcagacacagaaacgcatctctgcccag
agacgacagataaatgaggataatgagcgctgggagactaaccgtatgctgaccagtgga
gtggtccagaggctggaggtggatgatgactttgaggaggacaacgctgccaaggtccac
ctgctggttcacaacctggtccctcccttcctggacgggaggattgtcttcaccaagcag
ccggagcctgtcatccctgtgaaagacgccacctctgacatggccatcatctcccgcaag
ggcagccagctggtccgcaagcaccgcgagcagaaggaacgcaagaaggctcaacagaaa
cactgggagctggcaggcaccaagctgggtgacattatgggcatcaagaagaccgaggac
ggggatagctctgggggcaaaccagtgggcgaggatggcaaggtggactacagaacggat
cagaagtttgcagaccacatgaaagataagagtgaggccagcagtgagtttgctaagaag
aagaccctgttggagcagaggcagtatctgcccatcttcgctgtgaggcagcagctgctc
aacatcatcagggacaacagcattgtgatcgtggtgggggagacgggcagtgggaagacc
acccagctgacccagtaccttcacgaggacggctacaccagttacggcatggtgggctgc
acccagccccgcagagtggcagccatgagcgtggccaagagagtcagcgaggagctgggc
agcaacctgggagaggaggtgggttatgcgatccgctttgaggactgtacgtcggagaag
actgtgataaagtacatgacagacggcatcctgctgagagagtctctcagagagtcagat
ctggaccactacagtgctgtcatcatggacgaggcccacgaacgctccctcaacacagat
gtgctgttcggcctgctacgagaggttgtatcgaggcgttctgacctcaagctgatagtc
acctcagccaccatggactctgacaaatttgctgcatttttcggcaacgttcccatattc
cacattccaggaagaacattccctgtagacatcttattcagcaagactccccaggaagac
tatgtggaggcagcagtgaagcaggccctacagatccaccttagtggtatggggggagac
atcctcatcttcatgcctggccaggaggacatcgaggtgacgtcagaccagatcgtggag
cgtctggaggatctggagagcgcccctcctctaactgtactgcccatctactcccagcta
ccctctgacctccaggccaagatcttccagaaggctccagatggtgtgaggaagtgcatc
gttgccaccaacatcgccgagacctccctgactgtggatggtatcatgtttgttgtggat
gctggatactgcaaactcaaggtgttcaaccctcgcattggcatggatgccctgcaggtg
taccccatcagccaggctaacgccaaccagcgtgcaggcagagcaggacgtacagggccg
ggacagtgctacaggctgtacacccagagcgccttcaagaatgagatgttgaccaccacc
atcccagagattcagcggaccaacctggccaacgtggtgctgcttctcaaatccctgggg
gtccaggacctgctgctcttccacttcatggaccccccgcccgaggacaacatgctcaac
tccatgtaccagctgtggatcctgggggccctggacaacacaggtgccctgacacccact
gggaggctgatggtggagttccctctggacccggctctgtccaagatgctgatcgtatca
tgtgacatgggctgcagtgctgacatcctcatcatcgtctccatgctgtctgtaccggcc
atcttctacaggcctaagggtcgtgaggaggagagtgaccaggtgagggagaagttctct
gtcccagagagcgaccacctgacctacctgaacgtctacctgcagtggaagaacaacaac
tactccagcatctggtgcaacgaacacttcatccataccaaggccatgcgtaaggtgcgc
gaggtccgctcccagctcaaagacatcatggtgcagcagaggatgaacctggtgtcctgt
ggctcagactgggacatcatcaggaagtgtatctgtgctgcctacttccaccaggcagcc
aagctgaagggcataggggagtatgtgaacgtgaggacagggatgccgtgccacctccac
cccaccagctctctgtttggcatgggctacaccccagactacatcacctaccacgagctg
gtcatgaccaccaaggagtacatgcagtgtgtgactgcggtggatggggagtggctggct
gagctggggcctatgttctacagcgtcaaacaggcagggaagagcaggatggagaaccgg
cggcgggccaaggaggagatcactaacatggaggaggagatgtctctggcagagcagcaa
ctgaggagcaggagagaggatcagaacaggaagagcaacgtgggcaccgtcagggctgtg
aaaatctgcaccccgggaaggaaggaggaggcacccatgaccccaaagcgcaccccagct
cgttttgggctctag
DBGET
integrated database retrieval system
