Salmo trutta (river trout): 115167621
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Entry
115167621 CDS
T08542
Name
(RefSeq) low-density lipoprotein receptor-related protein 4-like isoform X1
KO
K20051
low-density lipoprotein receptor-related protein 4
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115167621
Membrane trafficking [BR:
stru04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
115167621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
Ldl_recept_a
FXa_inhibition
SGL
Vgb_lyase
cEGF
EGF_LRP2
DUF5050
EGF_CA
UPF0113
Motif
Other DBs
NCBI-GeneID:
115167621
NCBI-ProteinID:
XP_029578070
Ensembl:
ENSSTUG00000018050
LinkDB
All DBs
Position
29:40872126..41105769
Genome browser
AA seq
1917 aa
AA seq
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MQVSVVLCSMITFFLRSQGVLGSAECSCGRNHFTCAVSVFGECTCIPAQWQCDGDNDCGD
HSDEDGCMLPTCSPLDFHCDNGKCIRRSWVCDGDNDCEDDSDEQDCPPRECEEDEFHCQN
GYCIRSLWHCDGDNDCGDNSDELCDMRKCSDKEFRCTDGSCIAEHWYCDGDTDCKDGSDE
ENCPSDVMTATCSVEEFQCAYGRCILDIYHCDGDDDCGDWSDESDCSSHQPCRSVEFMCS
SGMCINAGWRCDGEFDCDDQSDEKNCTTSMCTADQFRCASGRCVRLSWRCDGEDDCSDGS
DEDDCEKTDTPPCAPDQFLCGNGRCIGQRKVCNEVSDCGDGTDEHPHQDCRPRSSDGNCN
LNNGGCSQKCQMARGLVQCTCHTGYRLMEDGRACQDVDECAEEGYCSQGCTNTEGGFQCW
CVQGYELRPDKRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHNQ
ELVFWSDVTLDRIMKANLNGSNVEEVVSTGLESPGGLAIDWIHDKLYWTDSGTSRIEVAN
LDGTHRKVLLWQSMEKPRAIALHPIEGKIYWTDWGNTPRIEYANMDGSNRRVIADTHLFW
PNGLTIDYAGHRMYWVDAKHHVIERADLDGRNRKAVISQGLPHPFAITVFEDSLYWTDWH
TKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGGRNRCGTNNGGCSHLCLPGNK
TYTCDCPTGFKKVDQHNCALSLDKFLLFARRTDIRRISFDTEDMSDDVIPLADVRNAVAL
DWHAEEGFIYWTDVTTDSINRAQWDGSRQEVVVDTSLESPAGLAIDWVTNKLYWTDAGTD
RIEVSNADGSMRTVLIWENLDRPRDIVVDPIGGYMYWTDWGVSPKIEQAGMDASSRIVII
SSNLTWPNGLAIDYQTQRLYWADAGMKTIEFGNFDGSDRQVLIGSQLPHPFGLTLHEEKL
YWTDWQSKSIQCANKMTGLGRQTLAENLENLMDIHMFHRYRTTVRTPCAVNNGGCSHLCL
LAPPTKGSSCTCPTGINLQLDGKTCTHGMSSFLIFARRTDIRMVSLDIPYFADVVLAVNR
SMKNTIAIGVDPKEGKVYWSDSTLKKVSRANINGTAHEDIIATGLMTTDGLAVDAVGRKI
YWTDTGTNRIEVANLDGSMRKVLIWQNLDSPRAIALYHEMGYMYWTDWGEHAKLERSAMD
GSDRLVLISNNLGWPNGLAIDSAGSQLLWADAHTERIEAADLNGQNRHTLVSPVQHPYGL
TLLGPHIYWTDWQSRSIQRADKTTGANTITVRSNLPGLMDIQAVDREKPLSFNKCGRRNG
GCSHLCLPRPNGTSCACPTGILLKGDARSCDDSPETYLLFSNRVSVRRISLDTNDHTDVH
VPVPELHNVISLDYDSVDGKLYYTDVSLDVIRRVNLDGTGMETVISQGLKTTDGLAVDWV
TRNMYWTDTGRNTIEVARLDGTSRKVLVNNSLDEPRAIAVFPSKGYLFWTDWGHIAKIER
AHLDGSDRKVLINTDLGWPNGLTLDYDTRRIFWVDAHLDRIESSDLNGKLRQILVSPVSH
PFALTQLKPVSSPLTPFSRLSQQDRWIYWTDWQTKSIQRVDKHTGRSKETVLANVEGLMD
IIIVSPQRQSGTNHCGVNNGGCTHLCFANTNSFVCACPDEPDSRPCSTISGYVPTSPDRE
TTSTPAPNKIPKAPTDTPQQGPPLINCTDKSLSVEGCVESNVVTAPHGEGLHISYVIGGA
LTILAILIIITAFIIYRHKKSKFADPGVSNLTYSNPSYRTSTQEVKIETSQKPPIYNQLR
YKKEGGGDSGYTKEKIRIVEGVCLLSSEELYWEDLKQLKPSRGGLHTCMRTDTVSLQASS
ASLDDGETEQLLQEETSECSSISTLTPVTVTPQRHPQHSLPDTGWTPARKPSTESEV
NT seq
5754 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtctctgtggtgctgtgtagcatgataactttctttcttcgcagtcaaggcgtg
ttgggcagtgcggagtgttcatgcgggcgcaaccacttcacgtgtgcagtgagcgtgttt
ggggagtgtacatgtatcccggcccagtggcagtgtgacggggacaacgactgtggcgat
cacagcgacgaggatggatgcatgctgcccacctgctctccactggacttccactgtgac
aatgggaagtgtatccgccgctcctgggtgtgtgatggggacaacgactgtgaggatgac
tccgacgaacaggactgtcctcctagagagtgtgaagaggatgagttccattgtcagaac
ggctactgcatccgcagcctgtggcactgtgatggggacaatgactgtggggataacagt
gacgagctgtgtgacatgcgtaagtgttccgataaggagtttcgctgtacagatgggagc
tgcattgctgaacactggtactgtgatggagacactgactgcaaggacggatcagacgag
gaaaactgcccatctgatgtaatgacggccacctgtagtgttgaagaattccaatgtgcg
tacggacgctgtattctggacatttaccactgtgacggagatgacgactgtggagactgg
tctgatgagtccgactgctcctcccaccagccttgtcgttctgtggagttcatgtgcagc
agtgggatgtgcatcaacgctggctggaggtgtgatggggagtttgactgtgatgaccaa
tcagatgagaagaactgcaccacctccatgtgtactgcggatcagttccgctgtgcatcg
ggacgctgtgtcaggttgtcatggagatgtgacggtgaggatgactgctctgacggcagc
gatgaagatgactgtgagaagactgacacccctccatgtgctccagaccagtttctgtgt
ggtaacggccgctgtattggccagaggaaggtctgtaatgaggtcagcgactgtggagat
gggactgatgaacaccctcaccaggactgccgcccgcggtccagcgatggcaactgtaac
ctgaataacggaggctgttctcagaagtgtcagatggccagaggtctggtccagtgtacc
tgtcatactggctacagactgatggaggacggcagggcctgccaggatgtggatgagtgt
gcagaggagggctactgcagccagggctgtaccaacacagagggagggttccagtgctgg
tgtgtgcagggctatgagctgaggcctgacaagcgcagctgcaaggcgctgggtcctgag
ccagtgctgctgtttgcgaaccgtatagacatccgccaggtgttgccccaccggtccgag
tacactctgctgctgaacaacctggaaaatgccatcgctctggacttccaccacaaccag
gagctggtcttctggtctgatgtcacgctcgaccgcatcatgaaggccaacctgaacggg
agcaacgtggaggaagtggtctccactggcttagagagtccaggtggtctggctatagac
tggatccatgacaagctgtactggactgactcagggacgtcccgtattgaggtggccaat
ctggatggaacccaccgcaaggtcctcctatggcaaagcatggagaaaccccgagccatc
gcactgcaccctatagagggcaagatctactggacggactggggtaacactcctcgtatc
gagtatgccaacatggacggctcaaaccgccgcgtcatcgccgacacccacttgttctgg
cccaacgggctgaccatcgactacgccgggcaccgtatgtactgggtggacgccaagcat
cacgtcatcgaaagagctgaccttgacgggcggaaccgtaaggccgtcatcagccaaggc
ttgccccatccatttgccatcacggtatttgaggatagcctttactggacagactggcac
accaagagcatcaacagtgccaacaagttcacgggcaagaaccaggagataatcagaaac
aagctgcacttccccatggatatacacacactgcacccgcagagacagcccgcaggtggg
cgtaaccgatgtgggaccaacaacgggggctgcagccacctctgtctccctggcaacaag
acctatacatgcgactgccccacgggcttcaagaaagtggaccagcataactgtgccctg
agtcttgacaagttcctgctttttgcccgaaggacggacatccgacgaatcagcttcgac
accgaggacatgtcagatgatgtcatcccgctggccgacgtacgcaacgccgtggcactg
gactggcacgccgaggagggcttcatctattggacggacgtcaccaccgactccatcaac
cgggcccaatgggacggctcaaggcaagaggtggtggtggacaccagtttggaaagtcca
gccggtctggctattgactgggtgaccaacaaactttactggaccgacgcaggtacagat
cgtatcgaggtatctaatgcagacgggagcatgcgtaccgttctgatctgggagaatctt
gaccgacccagggacatcgtggttgacccaattggaggatatatgtactggacagactgg
ggtgtgagtcctaagatagagcaggcagggatggacgcatccagccgtatcgtcatcatc
tcttccaacctgacatggcctaacggactggcaattgactaccaaacacagcgcttgtac
tgggccgacgccgggatgaagaccatcgagtttggcaactttgacggctcagacagacag
gtgttgattggcagtcagttgccccacccctttgggctgactctgcatgaggagaagctc
tattggacagactggcagtccaagagcatccagtgtgccaacaaaatgactggcctggga
cgacagacactcgccgagaacctggagaacctcatggatattcatatgttccaccgctac
cgcaccaccgtacggacaccttgtgcggtgaataatgggggctgcagtcacctgtgtctg
ttggctccaccgacaaaaggctccagctgtacctgtcctactggcatcaaccttcagctg
gacggaaagacctgcacacacgggatgagtagtttcctgatctttgcacggcggactgat
atcaggatggtttctctggacatcccctactttgctgatgtggtgctggctgtcaacaga
tccatgaaaaacaccatcgccatcggagtggaccctaaagagggtaaagtgtactggtca
gacagcacactgaagaaggtgagtagagctaacatcaatgggacggctcatgaggatatc
atcgctacaggtctgatgaccactgatggtctggcggtggatgcggtgggtcgaaagatc
tactggactgacaccggaacgaaccggatcgaggtggccaacctggacggctccatgagg
aaggttctgatctggcagaacctggacagcccgcgagccatcgccctctaccacgagatg
gggtatatgtactggacagactggggggagcatgctaagctggagcggtcagcgatggat
ggctcggaccgtttggttctgatcagtaacaacctaggctggcctaacggactggccatt
gacagtgccggctcacagctactgtgggctgacgcgcacacagagcgcatcgaggcggca
gacctgaatgggcagaaccgccataccctggtatccccggttcagcacccgtacggtctg
accctactaggaccacacatctactggaccgactggcagagccgcagcatacagcgggct
gacaaaaccaccggcgccaacaccatcaccgtacgcagcaacctgcccgggctcatggac
atacaggctgtggatagagagaagccactgagtttcaataagtgtggtagaaggaacggg
ggctgtagtcacctgtgtctgccccgccccaacggtacttcctgtgcctgtcccaccggc
atcctcctcaagggggacgccaggtcatgtgacgactcccccgagacctacctgctcttc
tccaaccgggtcagcgtgcgacgcatctccctggacacaaatgaccacacggacgtgcat
gtgcccgtgcctgagctgcacaacgtcatctcactggactatgacagcgtggacgggaag
ctgtactacactgatgtcagccttgatgttatcagacgggtcaacctggatggtacaggg
atggagaccgtgataagccagggtctgaagactactgatggtctggctgtggactgggtg
accaggaatatgtactggacggacacaggtcgcaacaccatcgaggtggcccgactggac
gggaccagccgcaaagtactagtcaacaacagcctggatgaacccagggccatcgctgtg
tttcccagcaaagggtacctgttctggacagactggggtcacattgctaagattgagcgg
gcacacctagacggatcagaccgtaaagttctgattaacacagacctgggctggcccaac
ggactcacactggactacgacacacgcaggatcttctgggtggatgctcacctggaccgc
attgagagttccgacctaaacggaaagctccgtcaaatcctcgtcagccctgtgtcccac
cccttcgccctcacacagttgaagccggtgtcctcccctctaacccctttctcccgactc
tcgcagcaagaccgttggatctactggacggattggcagactaagtccattcagcgtgtg
gacaaacacactggccgcagcaaggagacggtgctggccaacgtggagggcctcatggac
atcatcatagtctcgccacagaggcagagtggcactaaccactgtggagtgaataatgga
ggatgtactcatctctgcttcgctaatacaaacagctttgtctgtgcctgccctgatgaa
ccagacagcaggccctgctccaccatctcaggttatgtgccaacctcaccagacagagag
accaccagcaccccagcccctaacaagatccccaaagcccccacagacacgcctcagcaa
ggacccccactgattaactgcacagacaagagcctgagtgtggagggctgcgttgagagc
aacgtggtgacggctcctcacggggaggggcttcatatcagctatgtgattggaggagca
ttgaccattctggccatcctgataatcatcactgccttcattatttacagacacaaaaag
tccaagtttgctgaccccggggtgagcaacctgacttacagtaacccctcatataggacg
tcaacgcaagaggtcaagattgagacctctcaaaagccgcccatttacaaccagctacga
tataagaaagaggggggcggggacagtggctacaccaaggaaaagatccgcatcgtggaa
ggagtgtgtctcctctccagcgaggagctgtactgggaggacctgaagcagctgaagccg
tcgcggggtggtctgcacacatgcatgcgcacagacactgtgtccctgcaggccagcagt
gcctcgctggacgacggcgagacagagcagttgctccaagaggagacgtcggagtgttcg
tccataagcacgctgacccccgtcaccgtcacaccccaacgccatccccaacacagcctg
cccgacaccggctggacccccgcacgcaaaccctccaccgagagtgaggtgtaa
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