Salmo trutta (river trout): 115168317
Help
Entry
115168317 CDS
T08542
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X1
KO
K04851
voltage-dependent calcium channel L type alpha-1D
Organism
stru
Salmo trutta (river trout)
Pathway
stru04010
MAPK signaling pathway
stru04020
Calcium signaling pathway
stru04218
Cellular senescence
stru04260
Cardiac muscle contraction
stru04261
Adrenergic signaling in cardiomyocytes
stru04270
Vascular smooth muscle contraction
stru04530
Tight junction
stru04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115168317
04020 Calcium signaling pathway
115168317
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
115168317
09144 Cellular community - eukaryotes
04530 Tight junction
115168317
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
115168317
09153 Circulatory system
04260 Cardiac muscle contraction
115168317
04261 Adrenergic signaling in cardiomyocytes
115168317
04270 Vascular smooth muscle contraction
115168317
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
stru04040
]
115168317
Ion channels [BR:
stru04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
115168317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
115168317
NCBI-ProteinID:
XP_029579328
Ensembl:
ENSSTUG00000041889
LinkDB
All DBs
Position
30:complement(24190447..24298767)
Genome browser
AA seq
2149 aa
AA seq
DB search
MAFTVGVRRHRGAQYASSTRAPPPGDTPALWSENPSQPESCRQTGTISWQAEIHAARNSQ
DDVSQSMSARNSVPGATPAPVGSLSQRKRQQYAKSKKQGGSTNSRPPRALFCLTLNNPIR
RACISLVEWKPFDIFILLSIFANCVALAVYIPFPEDDSNSTNHDLETVEYAFLIIFTIET
FLKIIAYGLVMHQNSYVRNGWNMLDFVIVIVGLFSVVLEVITKEGDAGAQGGKPGGFDVK
ALRAFRVLRPLRLVSGVPSLQVVLNAIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKM
HATCYLVGTGILAEEEPVPCAMSGHGRQCMMNGTVCREGWHGPNGGITNFDNFLFAMLTV
FQCITMEGWTDVLYWMNDAMGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAK
ARGDFQKLREKQQLEEDLKGYLDWITQAEDIDPENDEEGDEEGGKRNPSKPASETESVNT
DNPNGEDDKANCCGPLCQKIIKSKYSRRWRRWNRFCRRKCRVAVKSVSFYWLVIILVFLN
TLTISSEHYNQPNWLTDVQDVANKVLLALFTCEMLVKMYSLGLQAYFVSLFNRFDCFVVC
GGIVETILVELAIMSPLGISVFRCVRLLRIFKVTRHWASLSNLVASLLNSMKSIASLLLL
LFLFIIIFSLLGMQLFGGKFNFDETITKRSTFDNFPQALLTVFQILTGEDWNAVMYDGIM
AYGGPFSSGMVVCIYFIILFVCGNYILLNVFLAIAVDNLADAESLNTAQKEEEEEKERKK
SARDDTDKMEELKPEGQDGDLKVPLEEEEEKEPYPTPDTPVGDDDNDDDNLPEVPVGPRP
QRLSDLSIKEKTPPIPEGSAFFIFSNTNPVRVACHKLINHHIFTNLILVFIMLSSVSLAA
EDPIRNFSARNIILGYFDYAFTAIFTVEILLKMTAFGAFLHKGAFCRNYFNLLDLLVVGV
SLVSFGIQSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLL
QFMFACIGVQLFKGKFYRCTDEAKSSPEECKGTYILYKDGDTALPAVRERIWYNSDFNFD
NVLMAMMALFTVSTFEGWPALLYKAIDSNRENMGPIYNYRVEISIFFIIYIIIIAFFMMN
IFVGFVIVTFQEQGEKEYKNCELDKNQRQCVEYALKARPLRRYIPKNPYQYKFWYVVNST
GFEYVMFVLIILNTLCLAIQHYGQSHLFNYAMDILNMVFTGVFTVEMIFKLIAFKPRGYF
GDAWNVFDALVVIGSVVDIILTQAIPVVKVIVDPGNTEDSARISITFFRLFRVMRLVKLL
SRGEGIRTLLWTFIKSFQALPYVALLIAMLFFIYAVIGMQVFGKIALVDHTQINRNNNFQ
TFPQAVLMLFRCATGEAWQEIMLACLPGKLCDSESDYNPGEEKTCGSGFAIIYFISFYML
CAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWSEYDPEAKGRIKHLDVVTLLR
RIQPPLGFGKLCPHRVACKRLVAMNMPLNSDGTVMFNATLFALVRTALKIKTEGNLEQAN
EELRAVIKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQDYFRKFKKRKEQGLVGR
HSFSSLNSTIALQAGLRTLHDIGPEIRRVISCDLQDEGLVDMNAEEDDEVSRRNGVLFAN
HTNHINGDHRGSVTQRPLQVPPPSCHAFVEPSQVGPEEGAGDPHPYNHYYPKSPMSSNAN
LNNANIPTVPSLTKGGQRHCLHREHSSANGTPSSSSHRKSVDFDTLPTVQSARRLYYDTY
IRSESGGVLYPTIRREKPGGADSDDDKGSGEYFSGEEYQEDDIMLHKDRMPHKEFQDLQT
DLDTNASRGYHQPDSLYDDDQQPIYQDGGRSPKRRLFPSTPQAPHRPSFNFECLRRHSSQ
DDDIPLTPSVPHRTALPLHLMQQQVMAVAGLDSSRVQRLSPSRSLRSWATPPTSPISRDH
SPYYTPLIQVDWRGPGSVSSTPGSVRRSSWYTDAPEAPLSLTYSPSQLQIPPEYRRKYHQ
KIGSANSLVEAVLISEGLGKYAKDPKFVAATKHEIADACEMTIDEMESAASNLLNGSMGN
GAGATGATDKVTATSLRDRNLHDYSDEEPDMSVKCEEDLTDEMICISTL
NT seq
6450 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaccgtcggggttcgaagacaccggggggcacaatatgccagcagcaccaga
gcccctccccctggtgatacgccggccctctggtcagaaaacccctcccagcccgagtcc
tgccgccagaccggcactatctcctggcaggccgagatccatgctgctcgtaactcccag
gacgacgtctcccagagcatgagcgcccgcaactctgtccctggggccacgcctgcaccg
gtaggctcgttgtcacagaggaagaggcaacagtatgccaagagcaagaagcagggcggc
tccaccaacagcaggccgcccagggccctgttctgtctcaccctcaacaatcccatccgt
agagcctgcatcagcctcgtggagtggaaaccctttgatatctttatactgctctctatt
tttgccaactgtgtggccttagctgtttacatccccttccccgaggacgactccaactcc
accaaccacgacctggaaacagtagaatatgccttcctgatcatctttacgatagagacc
tttctgaagatcatagcgtatggtttagtcatgcaccagaactcctacgtaaggaacggc
tggaacatgctagattttgtcattgtcatagtagggttattcagtgtagttctggaggtg
ataaccaaagagggtgatgcgggggctcaggggggtaaaccaggaggctttgacgtcaag
gccctccgagcgttccgggtactccgtcccctccgtcttgtctcaggagtacccagttta
caggtagtgttgaacgccatcattaaagccatggttcctctgctccacatcgctctgcta
gtcctcttcgtcatcatcatctatgccatcatcggcctggaactcttcatcggcaagatg
cacgccacctgctacctggtgggcaccggcattctggcagaggaggagcctgttccgtgt
gcaatgtcaggccatgggcgccagtgcatgatgaatgggactgtgtgtagagagggatgg
catggccccaacggtggcatcaccaactttgacaacttcctgtttgccatgcttactgtt
ttccaatgtatcaccatggaaggctggactgatgttctctactggatgaatgatgccatg
ggctttgagctgccctgggtctacttcgtcagtctggtcatcttcggctccttcttcgtt
ctcaacctggttctgggagtgttaagcggagagttttccaaggagagagagaaggccaag
gctcgtggagacttccagaagctgagagagaagcagcagctggaggaggatctgaagggt
tacctggactggatcactcaggccgaggacatcgaccctgagaatgacgaggagggggac
gaggaggggggcaaacgcaacccaagcaagcccgccagcgagacagagtctgtgaacact
gacaaccccaacggagaggacgataaggctaactgctgtggaccactctgtcaaaaaatt
ataaaatcaaagtacagtcggcgatggcgtcgctggaaccggttctgccgcaggaagtgt
cgtgttgccgtgaagtcggtgtctttctattggctggtgatcatcctggtgtttctcaac
acgctcaccatctcctcagagcactacaaccagcctaactggctcacggacgtccaggat
gtggccaacaaggttctgctggctctgtttacgtgtgagatgctggtgaagatgtatagt
ctgggcctgcaggcctacttcgtgtctctgttcaatcgcttcgactgcttcgtggtgtgt
ggtggcatcgtggagaccatcctggtggagctggccatcatgtctcccctgggcatctct
gtgtttcgttgtgtccgcctgctacgcatcttcaaggtcacacgccactgggcatctctc
agtaacctggtggcatcgctgctcaactccatgaagtccatcgcctccctcctgctcctg
ctcttcctcttcatcatcatcttctctctgttgggcatgcagctctttggaggcaagttc
aacttcgacgagacgataactaagaggagcaccttcgacaacttcccccaagcactactc
acagtgtttcagatcctgacaggcgaggattggaatgctgtgatgtatgacggcatcatg
gcgtacggtggacccttctcctcaggcatggtcgtctgcatctacttcataatcctcttt
gtctgtggaaactacatcctgctgaacgtcttcttggccatcgccgttgacaacctggca
gatgcagagagcctgaacacagcccagaaggaggaagaggaggagaaggagaggaagaag
agtgccagagatgacactgataagatggaggaactgaaacctgagggccaggatggggat
ctcaaggttccactggaggaggaagaggagaaggaaccgtatcccactccagacactcca
gttggtgatgatgacaacgatgatgataatctgccagaggttccggttgggccacgccct
caaaggctgtcagacctcagcatcaaggagaagactccgcccatccctgagggcagtgct
ttcttcatcttcagcaacactaacccggtccgggtggcctgccacaagctgatcaatcac
cacatcttcaccaacctcatcctggtgttcatcatgctgagctctgtgtctctggctgct
gaggaccccatacgcaacttctctgcacgcaacatcatacttggttattttgactatgct
ttcacggcaatctttactgttgagatcctattgaagatgacagcttttggggctttcctc
cataaaggagccttctgcaggaactacttcaacctgctggacctactggtggttggagtc
tctctggtgtcctttggcattcagtcatctgccatctctgtggtcaagatcctgcgtgtg
ttgagggtgttgcggcccctgagggccatcaacagagccaagggcctcaagcatgtggtc
cagtgtgtatttgtggccatcaggaccattggcaacatcatgatcgtcaccacgctgtta
cagttcatgttcgcctgcataggagtgcagctattcaagggcaagttctatcgctgcaca
gacgaggccaagtccagcccagaggaatgcaaaggcacatacatcctgtataaggatgga
gacacagccttgcctgcagttagggagaggatctggtacaacagtgacttcaactttgac
aacgtcctcatggccatgatggctctgttcaccgtctctacatttgaaggctggcctgct
ctgctctacaaggccatcgactccaacagagagaatatgggtcccatctacaactaccgc
gtggagatctccatcttcttcatcatctacatcatcatcatcgccttcttcatgatgaac
atctttgtcggtttcgtcatcgtcactttccaggagcagggagagaaagagtacaagaac
tgtgagctggacaagaaccagcgtcagtgtgtggagtatgctctgaaggctcgtccactg
agaaggtacatccctaagaacccctaccagtataaattctggtatgtggtcaactccaca
ggctttgagtacgtcatgttcgtcctcatcatcctcaacacactgtgtctggccatccag
cactatggccagtctcacctgttcaactatgccatggacatcctcaacatggtcttcact
ggcgtcttcactgtggagatgatctttaaactcatcgccttcaaacccagggggtatttt
ggggatgcctggaacgtcttcgatgccctggtggtgatcggcagcgtagtagacatcatt
ctcactcaggccatcccagtggtgaaggtgattgtggacccagggaacactgaggacagc
gctcgcatctccatcacattcttccgtttgtttcgagtcatgcgattggtcaagctgctc
agcagaggggagggcatccgaacgctcctgtggaccttcattaagtccttccaggctctt
ccctatgttgcccttctgatagccatgttattcttcatctatgctgttattggaatgcag
gtgtttggaaagattgccttggtagaccacacacagattaaccgaaacaacaacttccag
acctttcctcaagctgtcctgatgctcttcaggtgtgctacaggtgaggcgtggcaggag
atcatgctggcatgtctgccagggaagctgtgtgactcggagtcagactacaaccctgga
gaggagaaaacctgtggcagcggattcgccattatctacttcatcagcttctacatgctc
tgcgccttcctgatcatcaacttgtttgttgctgtcatcatggataactttgactatctg
acgcgtgattggtccattctgggccctcaccacctggatgagtttaaaaggatctggtct
gaatacgaccctgaggccaagggcaggataaagcatctggatgtggtgaccttgctgaga
cgcatccagcctcctctaggcttcggcaagctgtgtccacacagagtggcctgcaagaga
ctggttgcaatgaacatgcccctgaacagtgatggcacggtcatgttcaatgccactctg
tttgccttggtgaggactgctctgaagatcaaaactgaaggcaacttggaacaggccaat
gaggagttgcgagcggtcatcaagaagatctggaagaggaccagcatgaagctgttggac
caagtggtgccccctgcaggcgatgacgaggtaaccgtggggaagttttatgccaccttc
ctgatacaggactacttcaggaaattcaagaaacgcaaagagcaaggcctggtgggaaga
cactcattctccagcctgaactccaccatcgccctccaggctggcctccgcacactgcat
gatattgggcccgaaattcgccgagtcatatcatgtgacctacaagacgagggccttgta
gacatgaatgcagaagaagatgatgaggtgtctaggaggaacggcgtgctgttcgccaac
cacaccaatcacattaacggggaccaccggggttctgtcacccagcggcccctccaggtc
ccgcctccttcctgccacgcattcgtggagccctctcaggtcggccctgaggaaggggct
ggtgacccccacccctacaaccactactaccccaaatcccccatgtcctccaacgccaac
ctcaacaacgccaacatccccactgtgccctccctgaccaaaggggggcagcggcactgc
ctccaccgcgagcactcgtccgctaatgggacaccctcctccagctcacaccgcaagagt
gttgactttgacaccctccccacggtccagtctgcaaggaggctctactatgacacctac
attaggtcagaatcagggggtgttctgtacccaaccatccgtagagagaagccaggggga
gcagacagtgatgatgacaagggctcaggagaatacttcagtggcgaggagtaccaggag
gatgacatcatgttgcacaaagacaggatgccccataaggagtttcaagaccttcaaact
gacttggacacaaatgcatcgaggggttaccatcaaccggatagtctctatgacgacgac
caacaacccatttaccaagatggtgggcggtcgccaaagcgacggttgttcccctctaca
cctcaggcaccccacagaccctccttcaactttgagtgtctgcggagacatagcagtcag
gatgatgacatccccttgaccccttccgttccccatcgaacagctctacccctgcatctg
atgcagcaacaggtgatggcagtggctggcttggactccagcagagtccagcgtctctct
ccatcacgctctctacgttcctgggccacgccccccacctcccccatcagcagggaccac
tccccctactacacccccctcatccaggtggactggcgtggtccgggcagtgtgagcagc
acccctggctctgtgagaagaagctcctggtacactgatgccccggaagcccctttgagc
ctcacctactccccctcacagctccagatccccccagagtaccgcaggaagtaccaccag
aagataggtagtgccaacagcctagtggaggcagtgttgatttcagaaggactggggaaa
tacgccaaggaccccaaatttgtggcggcgacgaagcatgagatcgcggacgcctgcgag
atgaccatcgacgagatggagagtgccgccagcaacctgctgaatggcagtatgggtaat
ggagcgggggcaacgggggccacggataaagtgacggccacgagcctcagggaccgtaat
ctccatgactacagtgatgaggagccggacatgagtgtgaaatgtgaagaggatctgact
gatgagatgatatgcatcagcaccctatag
DBGET
integrated database retrieval system
