Salmo trutta (river trout): 115168349
Help
Entry
115168349 CDS
T08542
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04510
Focal adhesion
stru04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115168349
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115168349
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
stru00536
]
115168349
Glycosaminoglycan binding proteins [BR:
stru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115168349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
115168349
NCBI-ProteinID:
XP_029579378
LinkDB
All DBs
Position
30:complement(24822077..24852007)
Genome browser
AA seq
1420 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSIVRCQQEDDHVAIGAKGQKGEPGKIADVVGANGPAGPM
GPSGEQGPRGSAGAKGDKGNVGPRGRDGEPGTPGNPGPSGPPGPNGPPGLGGNFAAQMAG
GFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPAGPLGPHGPP
GPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGEGGAA
GAKGEGGAPGENGASGPMGPRGLPGERGRPGPSGTAGARGNDGLPGPAGPPGPVGPAGAP
GFPGSPGAKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAGAS
GIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPAGPQGAPGPA
GEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGSKGAPGDRGVPGVGGPKGGT
GDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGARGQPGVMGFP
GPKGANGEPGKAGEKGLVGRQGLIGLAGKDGETGAAGPLGPPGPAGERGEQGAAGPSGFQ
GLPGPAGPPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGGGPQGLQGPRGLPGTP
GSDGPKGAIGPAGGAGAQGPPGLQGMPGERGAGGISGAKGDRGDNGEKGPEGASGKDGSR
GLTGPIGPPGPAGPNGIKGEGGPSGSTGAAGARGAPGDRGEGGPPGPAGFAGPPGADGQP
GAKGELGEAGQKGDGGAHGPQGPSGAPGPVGPTGVSGPKGARGAQGASGATGFPGAAGRV
GSPGPNGNPGAAGPAGPAGKDGPKGVRGDAGTPGRQGDAGLRGVAGAPGEKGDAGVDGLP
GLDGPSGPQGLGGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAGGDRGPPGPVGPP
GLSGPSGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQ
GDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPGPP
GSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPLGPPGPRGRSGETGSAGPPGNP
GPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEPSSSLRQHDVEVDSTLKSLNNQ
IENLRSPDGSQKNPARTCRDLRLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETGETCVY
PSIANVPQKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFLRLLSTEASQ
NLTYHCKNSVAYMDASTGNLKKGLLLQGSNDVEIRAEGNSRFTYSVVEDGCKKHTGQWGK
TVFEYRTQKTSRLPIVDIAPMDIGGADQEFGLDVGAVCFL
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta
ctatccattgtcagatgtcagcaagaggatgaccacgtggcgattggtgctaagggccaa
aagggggaacccggcaagattgcagatgttgtaggagcaaatggaccagcaggccctatg
ggcccctcgggcgagcagggacctcgtggatcagccggagctaagggtgataagggaaat
gttggccccagaggcagagatggcgagcctggcacccccgggaaccccggaccctctggc
ccacccggacctaacggacctccaggccttggcgggaactttgctgctcagatggctggt
ggattcgacgagaaggctggaggtgcacagatgggagtgatgcaaggacctatgggccct
atgggtccccgtggtccacctggcccttctggagcacctggcccacaaggtttccaaggt
aaccccggagagactggagagccaggcccagctggcccactgggaccacacggaccaccc
ggaccttctggcaaaccaggaagtgatggtgaggctggcaaacctggaaaggctggtgag
cgtggacctgcaggacctcagggagctcgtggattccccggaactcctggtcttcctgga
atcaaaggacacaggggtcatcctggtctggatggagctaagggagaaggcggtgctgct
ggagccaagggtgagggtggtgctcccggagagaacggcgcgtctggaccaatgggacca
cgtggtctgcctggcgagagaggccgtcccggaccttctggaactgctggtgcccgaggt
aatgatggcttgcctggccctgctggtcctcccgggcctgttgggcctgctggagcaccc
ggtttccctggatccccaggagccaagggagaagctggccccactggtgcacgtggaact
gagggcgcacagggaccccgtggagaggctggtacacccggatctcctggacccgctggt
gcctctggcaaccctggtactgatggtatccctggagctaaaggatctgctggagcttct
ggaattgctggtgcacctggttttcccgggccccgtggcccccccggacctcagggagca
acaggacctcttggacccaagggacagtctggagaccccggtattcctggcttcaaagga
gaggctggtcccaagggagagcttggccctgctggtccccaaggcgcccctggtcccgct
ggcgaggagggcaagagaggagcaagaggagagcccggtgctgctggaccacttggacct
cctggcgagagaggagctcctggtaaccgtggtttcccaggtcaggatggtcttgctggt
tctaagggagcccctggtgaccgtggtgttcccggcgtgggtgggcctaagggaggcact
ggtgaccccggccgcacaggagagcctggtcttcctggagccagaggtcttactggtcgc
cctggagatgctggtcctcaaggcaaagttggtcctggtggtgctgctggtgaggacggt
cgccccggcccacctggtcctcagggagcccgtggccagcctggtgtgatgggattccct
ggaccaaagggagccaatggtgagcctggcaaggcaggagagaagggtcttgtgggtcgt
caaggtctgataggtctggctggtaaagatggtgagactggtgctgctggacctctcggc
cctcctggacctgctggagagagaggagagcaaggagctgctggaccttcaggcttccag
ggtctgcccggacctgctggccccccaggagagggaggcaagcctggtgatgcgggtgtt
cctggagaggctggtgctgctggtgccactggacctagaggcgagcgtggtttccctggt
gagagaggcggtggtggacctcagggtctgcagggacctcgtggacttcctggaactcct
ggaagtgatggaccgaagggagccattgggccagctggtggtgctggagctcagggaccc
ccaggtctgcagggtatgccaggagagaggggagctggtggaatctccggtgccaagggt
gacagaggtgacaatggagagaaaggacctgagggcgcttctggaaaagacggttctaga
ggtttgactggtcccattggtcctcctggcccagctggtcccaacggcataaagggtgag
ggtggaccttctggctcaactggtgctgctggtgcccgtggtgctcctggtgaccgtggt
gagggtggtcctcccgggcctgctggcttcgctgggccacctggtgcagatggtcagcct
ggagccaagggagagttaggcgaggctggacagaagggagatggtggtgcccatggacct
caaggaccctctggggcccctggacctgtgggtcccactggtgtttctggacctaaagga
gctcgtggtgcccagggggcttctggtgctactggtttccctggtgctgctggaagagtt
ggctctcccgggcctaacggtaaccctggtgctgctggccccgctggtcctgctggtaaa
gacggtcctaagggagttcgtggtgatgctggaaccccaggaagacagggagacgctggg
ctgcgtggagttgctggagcccctggcgagaagggagatgctggagtggatggtctccct
ggtcttgatggtccttcaggtccccagggtctgggtgggtcacgtggtattgttggtctg
cctgggcagcgtggagagaggggcttccctggccttcctggtccttctggagagcccggt
aagcagggagcgcctggtgctggtggtgaccgtggaccccctgggcctgtggggcctcct
ggactgtcgggaccttctggcgagcccggaagagagggcaacgctggatctgatgggccc
cctggtagagatggatccaccggagtcaagggtgagcgtggtaacactggtcctgcaggt
gcacctggtgcccctggtgctccaggtgcccccggccctgttggccccctgggcaagcag
ggagacagaggagagggaggtgctcaaggacctgccggacccgctggaccagctggcgct
agaggaatggctggaccccaaggaccccgtggagacaagggagaggctggcgagacagga
gagaggggacagaagggacaccgtggcttcaccggtctgcagggtcttcccggacctcca
ggctccgctggagaccagggagctgctggacctgccggacctagtggcgctaagggaccc
cctggcccagtcggccccgctggtaaggatggatctaacggtcagcctggacccctcgga
ccccctggacctcgtggtcgttctggagaaactggctctgctggtccacctggtaacccc
ggaccccctggtccacctggtcctcccggccctggcatcgacatgtctgcctttgctggc
ctgtctcagcctgagaagtctccggatcccctgaggtacatgagggctgatgagccgtcc
agctccctgaggcagcacgacgtggaggtggactccacactcaagtctctcaacaaccag
atcgagaacctgcgcagccctgatggtagccagaagaaccctgcccgcacctgcagagac
ctcagactgtgccacccagagtggaagagcggtgactactgggtggatcctaacattggt
agcacagctgatgccatcaaggtcttctgcaacatggagactggcgagacctgtgtgtac
cccagcatagccaacgtgcctcaaaagaactggtggacaagcaagagcaaggaccgcaaa
cacgtctggttcggagagactatgaatggaggattccacttcagctacgctgaggacggt
accaacgctgccagtatccagctgaccttcctaaggctgctgtccacggaagcatctcag
aacctcacctaccactgcaagaacagtgtggcctacatggacgcatccaccggcaacctg
aagaagggtctgctgctccagggctccaacgacgtggagatcagagctgagggaaacagc
cgcttcacctacagcgttgtggaggatggctgcaagaaacacacaggccagtggggaaag
actgtcttcgagtacagaacacagaagacctcccgtctgcccatcgtggacattgctccc
atggacattggaggagcagaccaggagttcggtctggatgtgggtgcagtctgctttttg
taa
DBGET
integrated database retrieval system
