Salmo trutta (river trout): 115168349
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Entry
115168349 CDS
T08542
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X2
KO
K19719
collagen type II alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04510
Focal adhesion
stru04512
ECM-receptor interaction
stru04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115168349
04518 Integrin signaling
115168349
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115168349
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
stru00536
]
115168349
Glycosaminoglycan binding proteins [BR:
stru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115168349
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
115168349
NCBI-ProteinID:
XP_029579380
LinkDB
All DBs
Position
30:complement(24822077..24852007)
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AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSIVRCQQEDDQEAGSCIQDDHRYNDKDVWKPEPCRICVC
DSGSVLCDEIICEEIKECANPIIQPGECCPICPADASAPTGYVAIGAKGQKGEPGKIADV
VGANGPAGPMGPSGEQGPRGSAGAKGDKGNVGPRGRDGEPGTPGNPGPSGPPGPNGPPGL
GGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGP
AGPLGPHGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGL
DGAKGEGGAAGAKGEGGAPGENGASGPMGPRGLPGERGRPGPSGTAGARGNDGLPGPAGP
PGPVGPAGAPGFPGSPGAKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGI
PGAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGP
AGPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGSKGAPGDRGV
PGVGGPKGGTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGA
RGQPGVMGFPGPKGANGEPGKAGEKGLVGRQGLIGLAGKDGETGAAGPLGPPGPAGERGE
QGAAGPSGFQGLPGPAGPPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGGGPQGL
QGPRGLPGTPGSDGPKGAIGPAGGAGAQGPPGLQGMPGERGAGGISGAKGDRGDNGEKGP
EGASGKDGSRGLTGPIGPPGPAGPNGIKGEGGPSGSTGAAGARGAPGDRGEGGPPGPAGF
AGPPGADGQPGAKGELGEAGQKGDGGAHGPQGPSGAPGPVGPTGVSGPKGARGAQGASGA
TGFPGAAGRVGSPGPNGNPGAAGPAGPAGKDGPKGVRGDAGTPGRQGDAGLRGVAGAPGE
KGDAGVDGLPGLDGPSGPQGLGGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAGGD
RGPPGPVGPPGLSGPSGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGA
PGPVGPLGKQGDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGF
TGLQGLPGPPGSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPLGPPGPRGRSGE
TGSAGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEPSSSLRQHDVEV
DSTLKSLNNQIENLRSPDGSQKNPARTCRDLRLCHPEWKSGDYWVDPNIGSTADAIKVFC
NMETGETCVYPSIANVPQKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTF
LRLLSTEASQNLTYHCKNSVAYMDASTGNLKKGLLLQGSNDVEIRAEGNSRFTYSVVEDG
CKKHTGQWGKTVFEYRTQKTSRLPIVDIAPMDIGGADQEFGLDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta
ctatccattgtcagatgtcagcaagaggatgaccaggaggcaggctcctgcatccaggat
gaccatcgttataatgataaggatgtgtggaagccggagccgtgtcgtatctgtgtgtgt
gacagcgggtcagtgttgtgtgatgagatcatctgcgaggagataaaagagtgtgccaac
cccatcatccaacctggagagtgctgccccatctgccctgcggacgccagcgcccccact
ggttacgtggcgattggtgctaagggccaaaagggggaacccggcaagattgcagatgtt
gtaggagcaaatggaccagcaggccctatgggcccctcgggcgagcagggacctcgtgga
tcagccggagctaagggtgataagggaaatgttggccccagaggcagagatggcgagcct
ggcacccccgggaaccccggaccctctggcccacccggacctaacggacctccaggcctt
ggcgggaactttgctgctcagatggctggtggattcgacgagaaggctggaggtgcacag
atgggagtgatgcaaggacctatgggccctatgggtccccgtggtccacctggcccttct
ggagcacctggcccacaaggtttccaaggtaaccccggagagactggagagccaggccca
gctggcccactgggaccacacggaccacccggaccttctggcaaaccaggaagtgatggt
gaggctggcaaacctggaaaggctggtgagcgtggacctgcaggacctcagggagctcgt
ggattccccggaactcctggtcttcctggaatcaaaggacacaggggtcatcctggtctg
gatggagctaagggagaaggcggtgctgctggagccaagggtgagggtggtgctcccgga
gagaacggcgcgtctggaccaatgggaccacgtggtctgcctggcgagagaggccgtccc
ggaccttctggaactgctggtgcccgaggtaatgatggcttgcctggccctgctggtcct
cccgggcctgttgggcctgctggagcacccggtttccctggatccccaggagccaaggga
gaagctggccccactggtgcacgtggaactgagggcgcacagggaccccgtggagaggct
ggtacacccggatctcctggacccgctggtgcctctggcaaccctggtactgatggtatc
cctggagctaaaggatctgctggagcttctggaattgctggtgcacctggttttcccggg
ccccgtggcccccccggacctcagggagcaacaggacctcttggacccaagggacagtct
ggagaccccggtattcctggcttcaaaggagaggctggtcccaagggagagcttggccct
gctggtccccaaggcgcccctggtcccgctggcgaggagggcaagagaggagcaagagga
gagcccggtgctgctggaccacttggacctcctggcgagagaggagctcctggtaaccgt
ggtttcccaggtcaggatggtcttgctggttctaagggagcccctggtgaccgtggtgtt
cccggcgtgggtgggcctaagggaggcactggtgaccccggccgcacaggagagcctggt
cttcctggagccagaggtcttactggtcgccctggagatgctggtcctcaaggcaaagtt
ggtcctggtggtgctgctggtgaggacggtcgccccggcccacctggtcctcagggagcc
cgtggccagcctggtgtgatgggattccctggaccaaagggagccaatggtgagcctggc
aaggcaggagagaagggtcttgtgggtcgtcaaggtctgataggtctggctggtaaagat
ggtgagactggtgctgctggacctctcggccctcctggacctgctggagagagaggagag
caaggagctgctggaccttcaggcttccagggtctgcccggacctgctggccccccagga
gagggaggcaagcctggtgatgcgggtgttcctggagaggctggtgctgctggtgccact
ggacctagaggcgagcgtggtttccctggtgagagaggcggtggtggacctcagggtctg
cagggacctcgtggacttcctggaactcctggaagtgatggaccgaagggagccattggg
ccagctggtggtgctggagctcagggacccccaggtctgcagggtatgccaggagagagg
ggagctggtggaatctccggtgccaagggtgacagaggtgacaatggagagaaaggacct
gagggcgcttctggaaaagacggttctagaggtttgactggtcccattggtcctcctggc
ccagctggtcccaacggcataaagggtgagggtggaccttctggctcaactggtgctgct
ggtgcccgtggtgctcctggtgaccgtggtgagggtggtcctcccgggcctgctggcttc
gctgggccacctggtgcagatggtcagcctggagccaagggagagttaggcgaggctgga
cagaagggagatggtggtgcccatggacctcaaggaccctctggggcccctggacctgtg
ggtcccactggtgtttctggacctaaaggagctcgtggtgcccagggggcttctggtgct
actggtttccctggtgctgctggaagagttggctctcccgggcctaacggtaaccctggt
gctgctggccccgctggtcctgctggtaaagacggtcctaagggagttcgtggtgatgct
ggaaccccaggaagacagggagacgctgggctgcgtggagttgctggagcccctggcgag
aagggagatgctggagtggatggtctccctggtcttgatggtccttcaggtccccagggt
ctgggtgggtcacgtggtattgttggtctgcctgggcagcgtggagagaggggcttccct
ggccttcctggtccttctggagagcccggtaagcagggagcgcctggtgctggtggtgac
cgtggaccccctgggcctgtggggcctcctggactgtcgggaccttctggcgagcccgga
agagagggcaacgctggatctgatgggccccctggtagagatggatccaccggagtcaag
ggtgagcgtggtaacactggtcctgcaggtgcacctggtgcccctggtgctccaggtgcc
cccggccctgttggccccctgggcaagcagggagacagaggagagggaggtgctcaagga
cctgccggacccgctggaccagctggcgctagaggaatggctggaccccaaggaccccgt
ggagacaagggagaggctggcgagacaggagagaggggacagaagggacaccgtggcttc
accggtctgcagggtcttcccggacctccaggctccgctggagaccagggagctgctgga
cctgccggacctagtggcgctaagggaccccctggcccagtcggccccgctggtaaggat
ggatctaacggtcagcctggacccctcggaccccctggacctcgtggtcgttctggagaa
actggctctgctggtccacctggtaaccccggaccccctggtccacctggtcctcccggc
cctggcatcgacatgtctgcctttgctggcctgtctcagcctgagaagtctccggatccc
ctgaggtacatgagggctgatgagccgtccagctccctgaggcagcacgacgtggaggtg
gactccacactcaagtctctcaacaaccagatcgagaacctgcgcagccctgatggtagc
cagaagaaccctgcccgcacctgcagagacctcagactgtgccacccagagtggaagagc
ggtgactactgggtggatcctaacattggtagcacagctgatgccatcaaggtcttctgc
aacatggagactggcgagacctgtgtgtaccccagcatagccaacgtgcctcaaaagaac
tggtggacaagcaagagcaaggaccgcaaacacgtctggttcggagagactatgaatgga
ggattccacttcagctacgctgaggacggtaccaacgctgccagtatccagctgaccttc
ctaaggctgctgtccacggaagcatctcagaacctcacctaccactgcaagaacagtgtg
gcctacatggacgcatccaccggcaacctgaagaagggtctgctgctccagggctccaac
gacgtggagatcagagctgagggaaacagccgcttcacctacagcgttgtggaggatggc
tgcaagaaacacacaggccagtggggaaagactgtcttcgagtacagaacacagaagacc
tcccgtctgcccatcgtggacattgctcccatggacattggaggagcagaccaggagttc
ggtctggatgtgggtgcagtctgctttttgtaa
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