Salmo trutta (river trout): 115168378
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Entry
115168378 CDS
T08542
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
stru
Salmo trutta (river trout)
Pathway
stru03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115168378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115168378
03036 Chromosome and associated proteins [BR:
stru03036
]
115168378
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115168378
Coactivators
SAGA/TFTC/STAGA complex
115168378
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
115168378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
MNHE
Motif
Other DBs
NCBI-GeneID:
115168378
NCBI-ProteinID:
XP_029579440
Ensembl:
ENSSTUG00000050283
LinkDB
All DBs
Position
30:complement(26698104..26709781)
Genome browser
AA seq
970 aa
AA seq
DB search
MRLTSEGSRVKMAAGSDLLDDVFFNTEVDEKVVSDLVGSLESELTVSGRGNSSVRVQAAA
NHIDNSAVGRNSNVQDSEMGLSQELAKPGTGVPGGVINSRRSQGSTMYAAVGTTAAGSSM
TAGHSPSKTGVPDHGTGIRKTGAAGVQTLNGRSVVINSHNSGSVAALVSSASSTVPAVAV
VNNGPSSVVKGNVILPSTSSTVIQTPLMHNAVTSTVISSQLSVLNSVPTVTLARPPMQTP
GTVTSQSGSNNTVLIRSVNVAHPASSEAQINKLESPKTTIQTTSQVTAPSVVGKSLVLQN
VRTSTPSTIAACPGGIKAIAPQVFSPRLPQPQQNASNIQNIQLPPGMVLVRSESGQLLMI
HQQTLAQMQSQSQSAMTPRAATPTSTPPVQITSVQAPGTPMMSRQVTPTTTITKQGSPAQ
TTVQATTTLQRPPVRQQNTIMLGGAAATSGQAPVQPCSAAVTQRAGTPGTPGAPTVVSTT
EILENVKKCKNFLSTLIKLASSGKQSSETTANVKDLVKSLLEGKIEAEDFTSRLYRELNS
SPQPYLVPFLKRSLPALRQMTPDSAAFIQQSQLLHGGAQPAASSKALTAVVLGGTSMAQK
SRLNSSSPGAKGTMHQFPVISLAQTPYSKPGLMVPQQQGAMARPQVTLAQSPMVTLRGQP
HSHIIMGQPQVVRQLQTVPVVKQALAPGAKVTLGPQSMLSVVLKNRQEAGGGTFKDDDDD
INDVASMAGVNLSEESARILATNSELVGMVTRSCKDEAFLYTSSLTQRVHEIGRRLGVTD
LGSEVINYVSHATQHRLQNLLEKVTVVAQQKNITFKEDDKCEQVSDVRAQLKFFEQLDQM
EKQRKEEQEREILMKAAKSRSRQEDPEQLRLKQKAKEMQQQELNQIRQKEANMTALAAIG
PRKKRKMNSPVRTGAEDLCSGPSPSGGYSSGGSRPQRQRITRVNLRDLLFCLENERETSR
SHLLYKGFLK
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctcacgagcgagggtagcagagtaaagatggcggcgggctccgatttattggat
gatgttttcttcaacacagaggtggacgagaaagtagttagtgatctagttgggtctttg
gagtctgagctcacggtatcgggtcgtggaaattcttcagtcagggtccaggcagcagca
aatcacattgacaactcagctgtaggtcgcaattccaatgtccaggacagcgaaatggga
ctttcacaagagcttgctaaaccagggactggcgtgccagggggtgtcattaatagtagg
aggtcccagggttcaaccatgtatgctgcggtcgggacaacggcggcgggctcgagcatg
acagccgggcacagtccgagcaagactggggttcccgatcacggaactgggatcagaaaa
actggggcggctggtgtacaaactttaaatggaaggagcgttgtgataaactctcataat
tcaggaagtgttgccgctttggtgagctcggcaagcagcacagtgcccgccgtcgcggtt
gtcaacaacggaccgagctccgtggtcaaaggaaacgtgatcttaccctcaacttccagc
acagtcattcaaacacctcttatgcacaatgctgtcacttcaactgtgatatcgtctcag
ctgtctgttctaaacagtgtgcccactgtcacgctcgcgaggccgcctatgcaaaccccc
ggaacagtcacctcgcagagcgggagtaataatacggttctgatacgatctgtcaacgtt
gcccaccctgcaagttcagaagcgcaaatcaacaaattggagtcgccaaaaacgaccata
caaacgacttcacaagtgaccgctcccagtgttgtaggtaaaagcctggtattacaaaat
gtgaggacctccaccccatcgactattgcagcctgtcctggtgggataaaggcgatcgcg
ccacaggtgttctccccgagacttccgcaaccccaacaaaatgcttcaaacatccaaaac
attcagctccctccaggcatggtgctggtacgcagtgagagtgggcagttactgatgatc
caccagcagaccctggcccagatgcagtcccagtcccagagcgccatgaccccacgggca
gccacccccaccagcactccccctgtccagatcacttctgtacaggctccagggacgccc
atgatgtcccgtcaggtgacccccaccaccaccatcactaagcagggctccccggcccag
accaccgtccaggccaccaccaccctccagagacctcctgtacgacaacagaacaccatt
atgctgggtggagcggccgccacgtcaggtcaggctccagtgcagccttgctcggcagca
gtcacccagagagcagggacccctgggacaccaggcgcccccacggtcgtttctaccacg
gagatcctggagaatgtgaagaagtgtaagaacttcctgtccacgctgatcaaactggca
tccagcgggaagcagtcgtctgagaccacagccaacgtcaaggacttagtcaagagcctg
ctggagggtaagatcgaagcggaggacttcaccagtcggttataccgggagctcaactcc
tctcctcagccatatctcgtgcctttcctcaagaggagtcttcctgcactgcgtcaaatg
accccagactcggcagccttcatccagcagagccagctgcttcacggtggtgcccagcct
gccgcctcctctaaggccttgactgctgtggtgctggggggcacgtccatggcacagaaa
tcccgtctcaacagtagcagccctggggccaaggggaccatgcaccagtttcctgtcatc
agcctggcccagacaccttatagcaagcctggcctgatggtgcctcagcagcagggggca
atggcgaggcctcaggtgactctggcccagtcacccatggttacgctccgaggccagccc
cacagtcacatcatcatggggcagccgcaggtggtcagacagctgcagacagttcctgta
gtgaagcaggctctagcaccaggggccaaggtaacactggggccccagtctatgctctct
gtagtactgaagaacaggcaggaggcaggcggaggaaccttcaaggatgatgatgatgat
ataaatgacgtggcctctatggctggagtcaacctatcagaggagagtgcccggattctg
gcaaccaactctgagctggtcggcatggtgactcgctcctgtaaagacgaggccttcctc
tacacctcctcactaacgcagagagtacatgagataggcaggaggttaggggtgactgac
ctggggtcggaggtgatcaactacgtttcccatgctacacagcatcggctgcagaacctg
ctggagaaagtgacggtggtggcgcagcagaaaaacatcaccttcaaggaggatgataag
tgtgaacaggtgagtgacgtgcgagcacagctgaagttctttgagcagctggatcagatg
gagaaacagaggaaggaggagcaggagagagagatcctgatgaaggcagctaagtctcga
tcacgacaagaggacccagaacagcttcggcttaaacagaaggctaaagagatgcagcag
caggaactgaatcagatcaggcagaaggaggccaacatgacggccctggcagccatcggc
cccaggaagaaaaggaaaatgaactcccctgtcagaaccggggctgaggacttgtgctct
ggtccctctccgtcaggtgggtacagtagcggaggctccaggcctcagcgccagcgcatc
acccgggtcaacctcagggacctgctcttctgtctggaaaatgagagagagaccagccgc
tcacacctgctttataaaggcttcctcaaataa
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