Salmo trutta (river trout): 115168460
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Entry
115168460 CDS
T08542
Name
(RefSeq) embryonic polyadenylate-binding protein-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
stru
Salmo trutta (river trout)
Pathway
stru03015
mRNA surveillance pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115168460
09123 Folding, sorting and degradation
03018 RNA degradation
115168460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115168460
03041 Spliceosome [BR:
stru03041
]
115168460
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115168460
mRNA cycle factors
Stress granule specific factors
115168460
Spliceosome [BR:
stru03041
]
Complex C
Other components
Complex C specific factors
115168460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
115168460
NCBI-ProteinID:
XP_029579630
Ensembl:
ENSSTUG00000018308
UniProt:
A0A673ZC51
LinkDB
All DBs
Position
30:complement(29639039..29645087)
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AA seq
651 aa
AA seq
DB search
MNSSGQSYPLASLYVGDLHPDVTEAMLYQKFSPAGPITSIRVCRDVITRRSLGYAYINFQ
QPADAECALDTMNYEVLKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIDTMNGMLLNDRKVLETGSDSGIADP
KAHFLGGKCQLSTISFVGHFKSHKERQAEFGAKAMKFTNVYIKNFGDDYSDEKLQEVFSA
FGRTLSVRVMMDERGRSRGFGFVNYENHEDAQRAVEEMNGKELVPGRVLYVGRAQKRTER
QGELKRKFELIKQERIHRYQGVNLYVKNLDDGLDDEKLRKEFAPYGTITSAKVMTDGGHS
KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERKAILTNKYMQRTMPGPVI
DSYQQAGYYMSAVPQPPSRTFYNPNPVSTMRTSPRWAAQPPRPQAPYSGQFVRSAVPRRA
STPISTVRQASTQAPRIINYTQRMANIGTQTAGGRAGMSGGMVRGTQYKYSSGVRNLQQV
ITMPAPMAVQQVVTQQMMEPAVHVRGQEPLTASMLAAAPLMEQKQLLGERLYPLIHGFHP
NLAGKITGMLLEIDNSELLHMLESPESLHSKVDEAVAVLQAHQAKENSPKK
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggtcagtcatacccattggcctccctctacgtaggggacctgcatcct
gacgtcacagaggccatgctctaccagaagttctctcctgctgggcccatcacatccatc
cgcgtctgccgtgatgtcatcactcgcaggtccctaggatacgcatacatcaactttcag
caacctgctgatgcggaatgtgctctggatacaatgaactatgaggtcctcaagggtagg
cctatcagaataatgtggtctcagcgcgacccagggctacggaagtcaggagttggaaac
atttttatcaagaacatggacgagtccattgacaacaaggccctgtatgacacattctca
gcctttgggaatattctgtcttgcaaggttgtgtgtgatgagaatggctccaaaggctac
ggctttgttcactttgagacccaagaggcagccaatcgtgccattgataccatgaatgga
atgctattgaatgaccggaaagtgctagagacaggtagtgactctggcattgcagaccca
aaggcccatttcctgggggggaaatgtcagttgtccacgattagttttgttggccacttt
aagtcccataaggagcgacaggctgagtttggggccaaagccatgaagttcaccaatgtg
tacatcaagaactttggtgacgactatagtgatgagaaactccaggaggtcttctctgca
tttggcaggaccctcagtgtgcgggtgatgatggacgaaaggggccggtctcgtggattt
ggctttgtaaactatgaaaaccacgaggatgcacaaagggcagttgaggagatgaatggg
aaagaactcgttcctggccgagttctgtatgtgggccgtgctcagaagaggacggagcga
cagggggagctgaaacgcaagtttgagttgatcaaacaggaacgtatccaccgctatcag
ggggtcaatttgtacgtcaagaacttggatgatgggttggacgatgagaaactcaggaag
gagtttgccccttatggcaccatcaccagtgccaaggtgatgacggacgggggccacagc
aagggctttggctttgtctgtttctcgtctcccgaggaggccaccaaagcggtaactgag
atgaacggccgcattgtggccacaaagcctctgtacgtggctctggcccagcgcaaggag
gagcggaaggctatcctcaccaacaaatacatgcagaggaccatgcctggcccagtcatc
gactcctatcagcaggcaggctactacatgtctgctgtgcctcagcccccaagtcgcacc
ttctacaaccccaaccctgtgagcaccatgaggacatctcctcgctgggctgcacagcca
cccagaccacaggcaccctactcgggccagtttgtcaggtctgctgttccccgacgcgcc
tccacccccatcagcaccgtcagacaggcctccacccaggctccacgcatcatcaactac
acacagaggatggctaacattggcacacagacagcaggaggtcgggcaggcatgtctggt
ggtatggtccgaggcacccagtataaatactcatcaggggtgaggaacttacagcaggtc
atcactatgcccgcaccaatggcagtgcagcaggttgttacccagcagatgatggagcca
gcggtgcatgtcagaggccaggaacccctcactgcctccatgctcgctgcagcccctctc
atggagcagaaacagctgcttggtgagcgattgtaccctctgatccatggctttcacccc
aacctggctggtaaaatcactgggatgctgctggagatagacaactctgagctgctgcac
atgctggagtcacccgagtccctgcattctaaggtggatgaggcggtagctgtgctgcaa
gcccaccaggccaaggaaaactctcctaagaagtag
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