Salmo trutta (river trout): 115168934
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Entry
115168934 CDS
T08542
Name
(RefSeq) nuclear RNA export factor 1-like isoform X1
KO
K14284
nuclear RNA export factor
Organism
stru
Salmo trutta (river trout)
Pathway
stru03008
Ribosome biogenesis in eukaryotes
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
stru05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115168934
03015 mRNA surveillance pathway
115168934
03008 Ribosome biogenesis in eukaryotes
115168934
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115168934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115168934
03009 Ribosome biogenesis [BR:
stru03009
]
115168934
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115168934
mRNA cycle factors
Stress granule specific factors
115168934
Ribosome biogenesis [BR:
stru03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
115168934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_4
LRR_6
LRR_9
Motif
Other DBs
NCBI-GeneID:
115168934
NCBI-ProteinID:
XP_029580327
Ensembl:
ENSSTUG00000001367
LinkDB
All DBs
Position
3:complement(14289908..14312263)
Genome browser
AA seq
679 aa
AA seq
DB search
MCSDNLVTVLGNFARLNMTFRKWYPNLAVVARVRFDHDQEGVVVQRDVTRKGKLPGEHDN
RVAGPQFRGGRMSQGPFRGPIYYDGPARQQRPRGGQMGGFRGPGPGPRVRFEDNYVHVTM
NSGSPQDGSSHRRFNPYRWPNRRGDGQFDRDRRGAGGYRGGGGGGGGREGDGGGEDKRSW
YKMIIPYGRKYDKKWLLTALQNLCSVPFTPVQYQIEGHKAQFYLEDACTANALCRISRQI
TDTEGYKVIVLMNPCPPPAILNTQLKPEDMEHLKQCMAKRFDGSQRALDLNNIRTDPDLV
SQNIRAILSRKTFMDAVVKIIEENIPELVCLNLSNNKLYKLEDVADLISKAPHLKILNLS
HNELKSEKELDRLKGLKLVELWLDRNPLCDQFKDQLTYISAIRERFPRLLKLDGHDLPPP
IVFEVVTPTTTPPCKGSYFGSEEIKVLILHFLQQYYSVYDSGNRQPLLDAYHDGASFSLS
LPSSQNPNRCSLREYHKHSRNIKRLKDPSTRFRLLKHTRLNVVALLNELPKTQHDTASFN
VDVNTYTTTLLSFTVSGMFKEVDGKSQDAVRAFSRVFIAVPAGISGLCIVNDELFVRIAT
TEEIQHAFAASAPTPSSSPVPTLTAPQQEMLSAFSLKSGMNLEWSQKCLQDNEWDFNKAA
QIFTQLKIEGKIPDVAFIK
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtgttcagataatttggtgacagtactcggtaactttgcgagactcaatatgaccttc
cgaaaatggtaccccaacctggctgtggtcgcacgtgtccgatttgaccacgatcaggag
ggagttgtcgtccagagagatgtcacgcgcaaaggcaagctaccaggagagcatgacaac
agagtcgcgggccctcagttccggggggggcgtatgagtcagggcccctttaggggccca
atctactacgacggtccggccaggcagcagaggcctcgagggggccaaatgggtgggttc
aggggccctggaccaggacctcgggtccggttcgaagataactatgtacacgtaactatg
aacagcgggagcccacaggatggcagctctcaccgcagattcaacccgtacaggtggccg
aatcggagaggcgatggacaatttgaccgagacagaagaggagctgggggctacagagga
ggaggaggaggtggaggagggagagaaggagacggaggaggagaagacaagagaagttgg
tacaagatgattattccctatgggaggaaatacgacaagaaatggctgctgacggcttta
cagaacctgtgctccgtacccttcacacctgttcagtaccagattgaaggccataaagcc
cagttctacctcgaggatgcctgcacagccaacgcactgtgcagaatctctcgccaaatc
acagacactgagggctacaaggtgatagtgctgatgaacccctgtcctcctcccgccatc
ctcaacacccaactgaagcctgaagacatggagcacttaaagcaatgcatggccaagcgt
tttgatggctcccagcgagcactggacctgaacaacatccgtactgacccagacttggtg
tctcagaacatcagggcgatcttgagcagaaagacctttatggatgctgtggtcaagatc
attgaggaaaacatccctgagctggtgtgtctgaacttgagcaataacaagctgtataaa
ctggaagatgtggcagatctgataagcaaggccccacacctgaagatcctcaacctctcc
cacaatgagttgaagtcagagaaggagctggataggttgaagggtttgaagctggttgag
ctgtggttggaccgtaacccactgtgtgaccagttcaaggaccagctcacctacatcagt
gctatcagggagaggtttccccggctactcaaactggatggtcatgacctccccccgccg
atagtgtttgaagtggtaacacccaccactacccccccctgcaagggtagctacttcggt
tcagaagaaatcaaggtcctcatcttgcatttcctgcaacagtactacagtgtatatgac
tctgggaacagacagcctcttctagatgcctaccatgatggtgcctccttctcactcagc
ttgccctccagtcaaaacccaaacaggtgtagtttgagagagtaccataaacacagccgt
aacataaagcgactcaaagatccatcaacacggttccgcctactgaagcacacacggctg
aacgtggtggcgttgctcaacgagctgcctaaaactcagcatgacacagcctccttcaat
gtagacgtcaacacctacacgaccacgttactgtcctttacggtcagcggcatgttcaag
gaagttgatggtaaatctcaagacgcggttagggccttctctcgggtcttcatcgcagtt
cctgcaggaatttctggtctatgcatagtgaatgacgagctatttgtgcgcatcgctaca
acggaggagatccagcatgcgttcgctgcttccgcccccactccctccagcagcccagtg
cccaccctcaccgccccccagcaggagatgctgtccgccttctccctcaagtctggcatg
aaccttgagtggtcgcagaagtgtcttcaggacaatgagtgggatttcaacaaagctgca
cagatcttcacacaattaaaaattgaaggcaagattccagatgtcgcttttataaagtga
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