Salmo trutta (river trout): 115168980
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Entry
115168980 CDS
T08542
Name
(RefSeq) ubiquitin conjugation factor E4 B-like isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru04120
Ubiquitin mediated proteolysis
stru04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
115168980
04120 Ubiquitin mediated proteolysis
115168980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
stru04121
]
115168980
Enzymes [BR:
stru01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115168980
Ubiquitin system [BR:
stru04121
]
Ubiquitin ligases (E3)
U-box type E3
115168980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
115168980
NCBI-ProteinID:
XP_029580432
Ensembl:
ENSSTUG00000044558
UniProt:
A0A674DUH1
LinkDB
All DBs
Position
30:5437026..5524346
Genome browser
AA seq
1179 aa
AA seq
DB search
MELSADEIRRRRLARLAGGQTSQPSTPLTSPQRETPPGPLPGTSGNTPQLFPPAASHTLG
LNVQSVTPATSPMGASGVAYCSQSSEGVSSLSSSPSNSLETQSLSRSQSMDIDTASCEKS
IISQVDVDSGIENMEVEDSDRRERRNLAEKESAETSDVSEEQALQLICKILRVSWKEQDR
DVIFLPSLAAEFHQSSPKDVYSDFKDLIGQILMEVLMMSTMSHIHNPFASLTATSQPIAA
AKSPDHHLTLVQPSSQGGSPMATCAGSFGASSLSSLGVSAGGMDSQSCNDCFSIEACMET
EMLNYLIERFDSVGMEESKAPKICSHPRVSQLLSNIRSQCISHTTLVLQGALTQPRSPLQ
QSLLVPYMLCRNLPYGFIQELARMTHQEEVFRQIFVPVLQGLALAVKECSFDSDNFKFPL
MALAELCEIKFGKTHPICNLMTSLPLWCPKSLGPGMGREAQRLSFLGAFFSLSVFAEDDT
KVGDKYFSGPAITMENTRVGSQTLQHYLESARGDLFKILHNILLNGETREVALNYMAALV
NRNVKKAQMQTDDKLVSTDGFMINFLSVLQQLSMKIKLETVDPYYIFHPRCRLQVSREET
RLKATMEELKTWLAEIHDDPSKFYDPKFPTECFFLTLHTHHLSILPGCRRYIRRLRAIRE
LNRTVEELKNSESQWKDSPLASRHREMLKRCKTQLKKLVRSKACADAGLLDENLLRRCLQ
FYSMVIQLILRMVDPAYPHVTLPLNPEIPKSFAALPEFYIEDVAEFLLFVVQYSPQVLYE
PCVQNIVTFLVVFICSQNYIRNPYLIAKLVEVLFVTNPAVQPRTQCFSEMMENHPLSVKH
LVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNMGHHGTFLEEFNSGKQFVR
YINMLINDTTFLLDESLESLKRIHEVQEEVKNKEQWDQLPREQQQSRQSQLTQDERVSRS
YLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYG
FEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSRELFEEVISKMKKAGIKSTITIEKFK
LLSEKVEEIVARNSQSEMDYSDAPDEFKDPLMDTLMTDPVILPSGNIMDRAIILRHLLNS
PTDPFNRQPLNESMLESLPELKERIQAWMREKQGQGRFL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggagttaagtgccgacgagatccgcaggaggagactggccagactggcaggaggacaa
acatcccagcccagcactcccctgacatccccacagagagagaccccccctgggcccctt
cctgggacctcggggaacacaccccagctctttccaccagctgcctcacacacactggga
ctcaatgtccagagtgtcacccccgccacctctcctatgggcgcctctggtgtggcgtac
tgcagtcagagcagcgagggtgtgagctccctctccagctctccctccaacagcctggag
acccagagtctgtccagatctcagagcatggacatcgacactgcctcctgtgaaaagagc
atcatatcccaagtggatgtggactcagggatagagaacatggaggtggaggacagtgac
cgcagggagaggaggaacctggctgaaaaggaatccgctgaaacctcagatgtctctgaa
gagcaggctctgcagctcatctgtaagatcctgcgtgtctcctggaaggagcaagacaga
gatgtcatctttctcccctcgcttgccgcagagttccaccagagcagccccaaagacgtc
tactctgacttcaaagacctgattggccagatcctgatggaggttctcatgatgtccacc
atgtcgcacatccacaaccccttcgccagcctgactgccacgtcccagccaattgctgct
gctaaatctcccgaccaccacctgacgctggttcagccctctagccagggcggcagtccc
atggccacctgtgcaggctcatttggggccagctctctgtccagtctgggtgtgtctgca
gggggaatggactcgcaatcctgcaacgactgcttctccatcgaggcgtgcatggagact
gagatgctcaactacctcatcgagcgcttcgacagtgtaggcatggaggaaagtaaggcg
ccaaagatttgcagccaccccagggtcagccagctcctcagcaacatacgctcacagtgc
atttcccacaccactcttgtccttcagggcgccctcacgcagcccaggagccccctgcag
cagtccctgctggtgccctacatgctgtgccgaaacctgccgtatggctttatccaggag
ctggcccgcatgacccaccaggaggaggtcttcagacagatctttgttccagtccttcaa
gggctcgctctggctgtgaaagaatgttccttcgacagtgacaactttaaattccccctc
atggccttagctgagctctgtgagataaagtttgggaagactcaccccatttgcaatttg
atgacatctctgcccctgtggtgtcccaagtctctgggcccggggatgggccgagaggct
cagagactgtccttcctgggagcattcttcagtctgtcggtctttgcagaggatgacacc
aaagtgggtgacaagtacttctcgggcccagccatcaccatggagaacactcgcgtgggt
agccaaaccctgcagcactacctggagtcagcccggggtgacttgtttaaaattctccac
aacatcctactaaatggagagacaagagaggtagcgctcaactacatggcagctctggtc
aaccgcaatgtgaagaaagcccagatgcagacagacgacaagctggtgtccacggacggc
ttcatgattaacttcctgtcggtgctgcaacagctgagcatgaagatcaagctggagacg
gtagacccgtactacattttccacccccgctgccgcctgcaggtcagccgtgaggagacc
cggctcaaggccaccatggaagagctcaagacctggctggccgagatacatgatgaccct
tccaagttctatgatcccaagttccccacagagtgtttctttctgacgttgcacacccac
cacctgtccatcctaccaggctgccgacgctacatccgcagactgagagccattcgcgag
ctcaacaggacggtggaagagctgaagaatagtgagagccagtggaaggactctccgctg
gccagccgacaccgagagatgctgaagagatgcaaaacccagctcaagaaactggtgcgc
tccaaagcctgtgccgatgcgggtcttctggacgagaacctgttacgcagatgtctgcag
ttctacagtatggtcattcagctcatcctacgcatggtggatcctgcctacccacacgta
actctaccactgaatcctgagatcccaaaaagctttgctgctctgccagagttttacatt
gaagatgtggccgagttcctgctttttgttgtgcagtattcccctcaggttctgtatgag
ccctgcgtccagaacattgtcaccttcctggtggtgttcatctgcagtcagaactacatc
cggaacccctacctgatcgccaagctggtggaggttctgtttgtcaccaacccagctgtg
cagccgcgcacccagtgcttctctgagatgatggagaaccacccactgtccgtcaaacat
ttggtcccggccctcatgaagttctacactgacgtggagcacaccggtgccaccagcgag
ttctatgacaagttcaccatccgctaccacatcagcaccatcttcaagagcctctggcag
aacatgggccaccatggcactttcctggaagagttcaactccgggaaacagtttgtgcgt
tacatcaacatgctgatcaacgacaccaccttcctgctggacgagagcctggagtccctg
aagcgcatccatgaggtccaggaggaggttaaaaacaaggagcagtgggatcagcttccc
agggagcagcagcagagccgtcagtcccagttaacccaggatgagcgggtgtcacgctcc
taccttgccctggctacagagacggtcgacatgttccacatcctcaccaagcaggtccag
aagcccttcctccggcccgagttggggcctcgtctggcggccatgctgaactttaacctc
cagcagctatgcgggcccaagtgccgggacctgaaggtggagaacccagagaagtacggt
tttgagcccaaaaagctcctagaccagcttactgacatttacctgcaacttgactgtgcc
cgcttcgccaaggccatcgccgacgaccagcggtcatacagccgagagctctttgaggaa
gtgatttccaagatgaagaaagccgggatcaagtccaccatcaccattgaaaaattcaag
ctgttatcggagaaggtggaggagatagtcgccaggaactctcagtccgaaatggactac
agtgacgcacctgacgagtttaaagaccctctgatggacacattaatgactgaccctgtg
atactgccctctgggaacatcatggaccgagccatcatcctccgccaccttctcaactcc
ccaactgacccctttaacagacagcctctcaacgaaagcatgctggagtcactccctgaa
ctgaaggagaggatccaggcatggatgagagagaagcaaggccagggacgtttcctctag
DBGET
integrated database retrieval system
