Salmo trutta (river trout): 115169486
Help
Entry
115169486 CDS
T08542
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115169486 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
115169486 (acin1a)
03015 mRNA surveillance pathway
115169486 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115169486 (acin1a)
03041 Spliceosome [BR:
stru03041
]
115169486 (acin1a)
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115169486 (acin1a)
Spliceosome [BR:
stru03041
]
Complex C
Other components
EJC/TREX
115169486 (acin1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_ACIN1
RSB_motif
Motif
Other DBs
NCBI-GeneID:
115169486
NCBI-ProteinID:
XP_029581007
UniProt:
A0A673XSY1
LinkDB
All DBs
Position
31:10447439..10486329
Genome browser
AA seq
1921 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLPKSGQKNALIKRLKGALMLENLQRTSHHH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEKEAREAVEDDDTDQEDHTQGNNSSA
CAAPDQDDVPVLVDQHKPLGPSEGEGLAGPASEGEGHRAKDGHVSGPPASTSPTSAPAAV
ASLSVCVADGEQRPERVPTSSQVPADSDDDSDGGDEDGEDEDWDSGARRRNLGEPPRGQL
ARERSEGSRQPPQHIPPLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPGELPARQRT
SSTSSSGSSSSGSRSSSPEPQSNAERKPGPLTLLARKMASEGAFSGVGWHGRGEAERQDN
NAATATIFPGRGPQEGTVSAITHTANAAASLPFPSLVPVTNQGVLGGHLSHSQVPVSVLR
PTIMEERDSAWQQENKERELQAESEREKALEQERLRAVELERQRIFEQQRAMEQERERAL
EREREEREKALDAERKERERALEREREKALEAERKERERALERERAQALEQEREEREKAL
AEEREKSLARERALQLEKEKAVELERQRAMEQEQALQQEREERERAIERAKAFEREERER
ALEREQALEQERVETARALERERVEREKALERERALEREQLEREKALEMERIEREKALEQ
ERVEKEKALELVRQKALKREQEEREKVLELERQKALELERQKALELELELERQKALELER
QKALELERQKALKREQEEREKALELERQKALELERQKALELERQKALELERQKALELERQ
KALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALE
LERQKALELERQKALELERQKALELERQKALELERQKALELERQKALEREQERQKALEQE
RVEKALELERRKALERELEEREKDREEKARALQQEIIEREKALEKERVEREKALEREREK
ERALEQKALQREKEERESVLEQDKERAKVAERESHLPPWKRGREIGLTPLPTPPLSTGAG
RMAATEEGGEPHVPSLPQTASRDNQPAESGTPLSPTIATPLSPQSSFKKFRFLRDPPVLS
PSCSASLVIKRPRTFSDSPHPQASALQSPRKPGEQEQESTLQGPKLSAGQAASQMPARQG
FLVSGPTAADTSDTTGPEIPVIATLGKSPEKEKAKELASEEHVLADKETDKQKVGELARG
AKGVDAGNVPSGPAESVMPPSPPPEEGNVDRGRERSQKKQEKRGRRASSSSDSSDSDSGS
SSSRSSGSSSSSQGKTRTTPSGRKPEKPQTKTISQDETVSQLEESNESPKAPQRKNRGSG
EKEEKDMTIDGARHDKKPFVGIPAGQDKEQKKDSEGEEEMTDTTREVKEAAMAEPERAPE
SSEESLTPKAFTARRISLSSSKASPGVVSAEGEAESGAGPGRKRRWGSSTAVTAKKPSIS
ITTDSLKSLIPDIRLSPGQEAVVDLHPEETHLSGGEEDREQGEQDFKIRRTVTQVVLSDT
QENGPKDSKRSENMEDREDGVEVKSDREEKMDDSFQRDSMETRSPSPPIHDMEMNTVTPS
DTLIRRSISQQKSGVSITIDDPVRTAKQPSPPRGKVSNIVHLSNLVRPFTLGQLKELLSR
TGTVLEDGFWIDKIKSHCYVTYSSAEEAVATRAALHGVKWPQSNPKFLSVDFSQQEELDF
HRGLPPPGGAGEEERGASSVPGRGRGAALPPLLPERDQWAEREREMERRERTRAEREWDR
DKVRDFGPGKPGEEAGPRRSRSRERKRKEKGKSKERKTNKKEKAAEEAPAKLLDDLFNKT
KAAPCIYWLPLTEEQFTQREVARQERRKEREKRRKEQQEEEEKKREEERKERIKAGSSAS
GERGEGDRDRERDRERGKDRDRDREGDKRRESSHRRPGGNSAGVGRRSRSRSDPPPRDRR
R
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacactggacgggaggccgctacaatctctacgggtggcg
gatttgaaagctgctttggaggagcgggggcttcctaaaagcggacagaaaaatgctctc
attaagaggctcaaaggggctctcatgctggagaacctccagagaacctcacaccatcac
ataggactgcagccaaactcccagattggtgaagagatgagccagaatagcttcattaag
cagtatctggcaaaacagcaggagctcttgaggcagcgtcttgagaaagaggcccgggaa
gcagtcgaagatgatgatacagaccaagaggaccacacacagggcaataacagctctgcc
tgtgctgccccagaccaggatgacgtacccgtgttggttgaccagcacaagccacttggc
ccctccgagggagagggactagcaggccccgcaagcgagggagagggacacagggccaaa
gacggccatgtgtctggtccacctgcctctacctcgcctacctctgcccctgctgccgtt
gcctctctgtctgtgtgtgtagctgatggtgagcagcgaccggagagagtcccaacctct
agccaagtcccagcagatagcgatgatgacagcgacggaggtgacgaggatggcgaggat
gaggactgggatagcggtgccaggaggaggaatctaggagagccaccaagaggccagcta
gcaagagagaggtctgaaggatcccgccaacccccacagcacatcccccccctgttgtct
ccgcagcttcgacagcctacccctcctccctcccctcccccagagttatcattcccactg
cctgatacccctaaacaaagcccccctagtccaggtgagctcccggctaggcagcgtact
tccagtacctccagctctggctcctctagcagtggcagtcgtagtagcagtccagaacca
caaagcaacgcagagcgcaagcctggcccactgaccctgctggcacgcaagatggcatca
gaaggcgctttctctggagttgggtggcatggacgtggggaggcagaaaggcaggacaac
aatgctgcaactgcaacaatatttcctggtagaggtcctcaagagggcacagtgtctgcc
atcacccacacagccaatgctgcagccagtttgcccttccccagtctggttccagttacc
aaccagggtgtccttggaggccatctatcccacagtcaagttcctgtgagtgtgcttagg
cccactataatggaagagagagattctgcatggcaacaagaaaacaaggaaagggagctg
caggcagagagtgaaagagaaaaggcccttgagcaagagagacttagagctgtggagctg
gaaagacagagaatatttgagcaacagcgtgccatggagcaagagagggaaagagctttg
gagcgagagagggaggagagggagaaagccttagatgcagaaaggaaggagagggaaagg
gctttggagcgagagagggagaaagccttggaggcagaaaggaaggagagggaaagagct
ttggagcgagagagggcacaagctcttgaacaagagcgggaggaaagagagaaagctttg
gcagaagagagagagaagtctctggcaagagagagggcccttcagcttgagaaagagaag
gctgtggagttagaaaggcagagagccatggaacaagagcaagctttgcagcaagagaga
gaggagagggaaagagcaatagagagagctaaagcttttgagcgggaggagagggaaagg
gctcttgagcgggagcaagctcttgaacaagaaagggtggagacagcgagagctttggag
cgagaaagggtggagagggagaaagccttggagcgagagagagccttggagcgagaacag
ttggagagggagaaagcgttggagatggagcgtatagagagggaaaaggctttggagcaa
gagcgagttgagaaggagaaagctttggagctagtgaggcagaaagctttgaagcgggaa
caggaggagagggaaaaggtgttggagctagagaggcagaaagcgttggagctagagagg
cagaaagcgttggagctagagttggagctagagaggcagaaagcgttggagctagagagg
cagaaagcgttggagctagagaggcagaaagctttgaagcgggaacaggaggagagggaa
aaggcgttggagctagagaggcagaaagcgttggagctagagaggcagaaagcgttggag
ctagagaggcagaaagcgttggagctagagaggcagaaagcgttggagctagagaggcag
aaagcgttggagctcgagaggcagaaagcgctggagctcgagaggcagaaagcgctggag
ctcgagaggcagaaagcgctggagctcgagaggcagaaagcgctggagctcgagaggcag
aaagcgctggagctcgagaggcagaaagcgctggagctcgagaggcagaaagcgctggag
ctcgagaggcagaaagcgctggagctcgagaggcagaaagcgctggagctcgagaggcag
aaagcgctggagctcgagaggcagaaagcgctggagctcgagcggcagaaagcgctggag
ctcgagcggcagaaagcgctggagcgggaacaggagaggcagaaagcgctggagcaagag
cgagttgagaaagctttggagctagagaggcggaaagctttggagcgggaactggaggag
agggagaaagatagggaggagaaggcaagggctttacagcaagaaataattgaaagggag
aaagcccttgagaaagaaagagtggagagggaaaaagctttggaacgtgagagagagaag
gagagggctttagaacagaaggccctgcagagagaaaaagaggagagggagagtgttttg
gaacaagataaggaaagggctaaggtggctgagagggagagtcatcttcctccatggaaa
cgtggtcgtgagattggtcttacccccctgcccactcctcccctctccacaggagcaggt
agaatggcggcaacagaggagggtggggagccccacgtgccatccctaccccaaacagca
tcgagagacaaccagccagctgaatctggtacgcccctgtcaccaactatagcaacgcct
ctgtcaccccagtcctccttcaagaagttccgtttcttgagagaccccccagttctgtcc
ccatcttgctctgcatccctggtcatcaagaggccccgtacgttctctgacagcccccat
cctcaggcctcagctctccagtccccaagaaaacctggggaacaagagcaggaaagtact
ctgcaggggcccaagctttctgctggacaggcagcatcacagatgcctgcaagacagggg
ttccttgtttccggaccaactgcagcagacacgtctgacacgacagggccagagatccca
gtgattgccacactaggcaagagtcctgaaaaagaaaaggctaaggagcttgcgtcagag
gagcatgtcctagcagataaggagacagacaaacagaaagtgggagagctggccagaggc
gctaaaggggtggatgcaggaaacgtcccctcgggtccagcagaatctgtgatgcctccc
tcaccccctccggaagagggcaatgtagaccggggaagggagagaagtcaaaagaaacaa
gagaagcggggaagacgagcttcctcatctagtgactcctcagattctgactctgggtca
tcctcctcacgttcgtctggttcatcttcgtcctcccagggcaaaacccgcaccactccc
agtggtagaaagcctgagaaacctcagacaaaaaccatatcccaggatgagacagttagt
caacttgaggagtcaaatgagtccccaaaagcccctcagcgcaaaaatcgaggatctggg
gagaaggaagagaaggacatgaccatcgatggagccagacacgacaagaaacctttcgtt
ggaatacctgctggacaagacaaggagcagaagaaggacagcgagggagaggaggaaatg
acagacactacaagggaggtgaaggaggctgccatggctgagcctgagcgggctcctgag
agcagtgaggagagtctgacaccaaaggcattcacagcccgtaggatctctcttagcagc
agcaaggcctctccaggtgtcgtcagtgcagagggcgaggcagagtctggggccgggccc
gggaggaagaggaggtggggttccagcactgcagtcacagccaagaaaccatccatcagc
atcaccacagactctctgaagtctctgatcccagacatcaggctgagtccaggacaggag
gcggtggtggatctgcacccagaggaaactcacctctctgggggagaggaggacagggag
cagggcgagcaagacttcaagatcagacgcactgtcacacaggtggtcctgtccgatacc
caggagaatggaccgaaggactccaagaggagtgaaaacatggaggacagagaggatgga
gtggaggttaaaagcgacagagaggagaagatggacgactcattccagagagactccatg
gagacacgatccccctctccccccatccatgacatggagatgaacacagtgaccccaagt
gacaccctgatccgtcgctccatcagccagcagaagtctggcgtgtccatcaccatagat
gaccctgtccgcacggccaagcagccctctcctccacgaggcaaagtgtccaacatcgtc
cacctgtccaacctggttcggccgttcaccctgggtcagctgaaggagctgctcagcagg
actggcaccgtgctggaggatggcttctggatcgacaagatcaaatctcactgctacgtc
acctactccagtgcagaggaggcagtggccactcgtgcagcactacatggggtgaaatgg
cctcagagcaaccccaagttcctcagtgtggacttcagtcagcaagaggagcttgacttc
cacagaggcttgccaccccctgggggggctggagaggaggagcggggggcttcgtcggtg
cctggccgaggtcggggggcggccctgccccctctcctgcccgagcgtgaccagtgggcg
gagcgagagcgtgagatggagcgcagggagaggacccgggcagagagggagtgggacagg
gacaaagtccgggactttggtcccggaaaacctggagaggaggcgggccccagacgatcg
cgctccagagagaggaagcgcaaggagaagggcaagagcaaggagaggaagacgaacaag
aaagagaaagctgcagaggaagcccctgccaaactgctggatgacctgttcaataaaacc
aaagcagccccttgtatatactggctccccctcacagaagagcagtttacacagagggaa
gtagctcgacaagagaggaggaaggagcgagagaagaggaggaaggagcagcaagaggag
gaggagaagaaaagggaggaagagcgcaaagagaggataaaagcagggagtagcgcatct
ggcgaaagaggcgagggggacagggacagagagcgagacagggagaggggcaaagacagg
gaccgagacagagagggtgacaaacgcagagaaagcagccaccgcagaccagggggcaac
agtgcaggggtgggcagacgctctcgcagccgcagtgatcctccacctcgtgacagacga
cgctag
DBGET
integrated database retrieval system
