KEGG T08542: 115169942

Salmo trutta (river trout): 115169942

Entry

115169942         CDS       T08542

Name

(RefSeq) ubiquitin-60S ribosomal protein L40-like

K02927

ubiquitin-large subunit ribosomal protein L40e

Organism

stru Salmo trutta (river trout)

Pathway

stru03010

Ribosome

stru04120

Ubiquitin mediated proteolysis

stru04137

Mitophagy - animal

stru04140

Autophagy - animal

Brite

KEGG Orthology (KO) [BR:stru00001]
09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    115169942
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    115169942
09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    115169942
   04137 Mitophagy - animal
    115169942
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:stru03011]
    115169942
   04121 Ubiquitin system [BR:stru04121]
    115169942
Ribosome [BR:stru03011]
Ribosomal proteins
  Eukaryotes
   Large subunit
    115169942
  Archaea
    115169942
Ubiquitin system [BR:stru04121]
Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   115169942

SSDB

Motif

Pfam:

ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 TBK1_ULD Ubiquitin_5 zf-C4pol OTU1_UBXL Dsc3_N UBL_UBAC1

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

Ensembl:

UniProt:

LinkDB

Position

31:31081498..31084921

AA seq 128 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTSN
LRPKKKLK

NT seq 387 nt +upstreamnt +downstreamnt
atgcagatctttgtgaaaacgttgacgggtaaaaccatcacccttgaggtggaacccagt
gacaccatcgagaatgtgaaggccaagattcaagacaaagaaggtattcctcctgaccaa
cagcgactcatcttcgctggcaaacagttggaggatggccgcacgttgtcagactacaac
attcagaaagagtccactcttcatctcgtcctgcgtctgagaggaggtatcatcgagcct
tccctgagacagctggcacagaaatacaactgtgacaaaatgatctgccgcaaatgctat
gcacgtcttcacccccgtgcagtcaactgccgcaaaaagaagtgtgggcacaccagcaac
ctgcgccccaagaagaagctgaagtaa

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