Salmo trutta (river trout): 115170124
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Entry
115170124 CDS
T08542
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04510
Focal adhesion
stru04512
ECM-receptor interaction
stru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115170124
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115170124
09142 Cell motility
04820 Cytoskeleton in muscle cells
115170124
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stru04147
]
115170124
00536 Glycosaminoglycan binding proteins [BR:
stru00536
]
115170124
Exosome [BR:
stru04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115170124
Glycosaminoglycan binding proteins [BR:
stru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115170124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115170124
NCBI-ProteinID:
XP_029582299
LinkDB
All DBs
Position
31:36165997..36252291
Genome browser
AA seq
1662 aa
AA seq
DB search
MSPFACWVTFCSLPIWWIVLLHISEQRVNAGETLGSCDGRDCSVCSCLPAKGARGAPGKL
GKQGPQGPDGIRGSAGPHGEKGRRGVEGPPGLDGKKGERGQTGHPGFPGIDGVNGHVGAG
GNPGLPGLDGCNGTRGQTGIPGVHGTNGFPGPRGYLGPKGTKGEPVYDVSVPGLPGDPGP
PGRSGSPGPKGHTGSAGPNGNNGPDGPPGDRGEPGDNGRSLPGIKGDEGDQGQPGPPGPE
EIVEPPDFFYPKGGKGDKGLPGPCGPRGITGEKSYEGLKGETGIRGFPGPRGYIGSTGLP
GTPGPQGYPGDQGFPGLIGRTGPTGFPGDKGFRGPSRQIYHNYTVAGYPGDPGPQGPRGP
PGDIGEMGINGPPGPPGVLISTGQPGQLGYPGLPGPKGLKGEPGRYYTIEPIPGQPGERG
RPGAKGFRGPPGYGGIYCVPGEPGIRGDDGDTGYPGVTGYKGEKGYNGECECTYENGHRG
IPGPPGPRGPLGYDGLPGHSGEKGDHGYNGDPGSQGSHGNPGRPGYNGVKGQKGESYVTN
YKGAKGDPGFNGPNGPFGATGRPGSDGFPGTVGDPGPPGDGYGGSVGDKGYPGPHGPVGP
PGRPGPLGPGAPGRHGHQGPPGDAGLPGLPGQPGPRGEVLPCGPYNPGLPGLKGLLGPPG
NPGPPGPLGFPGPTGSLGPQGMRGDDGTDGGTGPSGHQGCVGDNGDPGQPGINLDGPPGL
PGPPGSPGWPGPPGDTFNTGPGPIGPPGLPGLLGPKGDPGLPGIPGPPGGLGPCGGVGYK
GSKGDTGDPGPSGPPGPIECREKGAVGPPGASGPPGVRGPSGFRGDKGRKGAMGPPGRGV
KGPAGVPGPPGPPGPVGAKGFSGSPGDPGFPGVTGTKGPRGYPGRDGSAVPGTPGRPGNP
GSRGRQGERGFTGRDGQDGDQGYKGAKGHRGPPGSPGPVGVITIKGQKGSEGPPGEDGFT
GPRGSKGPSGSPGKPGGNGQDGPPGYEKGLPGQPGRPGPPGPPGPRGPKGLSGIVGFPGP
VGDKGDPGHTGPPGNPGLPGTTGLPGDPGDSIGQPGLPGPPGPPGESRTLASKGDPGDPG
APGPRGSPGQPGVHGARGPLGGPGFPGPSGPPGRPGSPGPPGGILGGQGPKGNPGQPGPP
GFPGPPGLHGLNGLQGQKGEKGARGPDVLGPRGPSGFPGVKGHTGSQGPPGTSYPGPKGL
RGPPGYQGPKGLAGEPGGSGGECTECHRGPNGEPGYEGIHGPPGPPGEPGPAGTAEPSPG
DPGPQGPPGPNGHKGQRGPPGPLGPTDYSGSQGPKGARGPEGHMGPNGPRGRPGAYGLLG
PKGDKGRPGDAGPKGLPGQVLDGVVTTQEPHRGIHGPSGPLGPNGPPGKAGPRGNPGPHG
PKGPAGSRGPPGRNGPPGPPGPLGDPGDHGQQGFVGHQGPPGSQGDRGYPGSTGSVSSGF
LLVIHSQSVEVPVCPEGSSPLWTGYSLFYLEGQERTHTQDLGQAGSCLRIFSTMPFSYCN
TGTCDYASRNDKSYWLSTTAAVPMMPVSGHDIRAHISRCAVCETPSPAVAVHSQDYIAPT
CPPGWRSLWAGYSFLMHSGAGDEGGGQSLTSSGSCLRDFRAQPFVECQGPRGTCHYFANV
YSFWLTHVSLDEQFGPGPVPSVLKAADQQRQQASRCHVCTKG
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atgagtcccttcgcttgctgggtgaccttctgttctctgcctatctggtggatcgtcctg
ctgcacatctctgaacagagggtcaatgctggagagacgctgggctcgtgtgatggcaga
gactgctcagtgtgcagctgtctccccgccaagggagcccggggggccccagggaagctg
gggaagcaggggccacagggcccagatggcatcaggggctccgcagggcctcacggagag
aaggggaggaggggcgtcgagggaccacctgggctggacggaaaaaaaggggaacggggt
cagactggtcacccaggatttcctggtatcgatggtgtcaatggtcacgttggtgctggg
gggaatcctggtctgccggggctagacggctgtaacgggaccaggggacagacggggatc
cccggtgttcatggcacgaacggattccccggacccaggggatatctcggtcccaaagga
acaaaaggggagcctgtctacgatgtatctgttcctggccttcctggcgaccctgggcct
cctggaagatctggatcacctggacccaagggtcacacggggtctgctggacctaatgga
aataatggtccagacggtccacccggggatagaggagaaccaggtgacaatggcagatca
ctgccgggcattaaaggtgatgagggggaccagggtcaaccagggcctccggggcctgag
gagatcgtcgagcctccagactttttctaccccaaaggaggcaagggggataaagggctt
cctggaccatgtggacccagaggcataactggagaaaaatcctatgaaggactaaaggga
gaaactggaatccgtggctttcctggccctcggggttacataggatctaccggcctgcct
ggaacgcctggaccacagggctatcctggagaccaagggtttcctggtctgatcggcagg
acaggaccaacgggcttcccaggagacaaaggcttcagaggaccgtcgcgccaaatatac
cacaattacactgtagcaggttaccctggtgatcctggcccccaaggtccaagggggcca
ccaggagacattggagagatgggcattaatggacctccgggaccaccaggggtattaatc
tctacaggtcaaccagggcagctaggttaccccggtctccctggtcctaagggtttaaag
ggggagccaggcaggtactacactatagagccaataccaggacaaccaggggaaagaggg
cgtcccggagccaaggggttcagaggccccccaggatatggaggcatttattgtgttcct
ggtgagccgggtatacgaggagacgatggcgataccggatatccaggagtaacgggatac
aaaggagaaaaaggctacaacggtgagtgtgagtgtacgtacgagaatggtcacagaggg
atcccaggtcctccgggcccccgcggacccctagggtatgacgggctgccagggcacagc
ggagagaaaggtgaccatggatataatggggaccctggctcacaaggatcccacggaaac
ccaggcaggcctggttacaatggagtgaagggacagaagggagagtcctatgtgaccaac
tataaaggtgcgaagggtgaccctggcttcaatggccccaacggaccgtttggggccact
ggtcggccaggatccgatggcttccctggcactgtgggagaccccggacccccgggtgac
ggttacgggggctcggtaggtgacaaaggctacccagggccccatggtcctgtaggcccc
ccaggcagaccgggccccctaggccctggtgctccaggccgtcatggccaccaagggccc
ccaggggacgcgggcctcccaggtctccctggacaacctggacctcgaggcgaggttctg
ccctgtggcccttacaaccctggcctacctggcttaaagggtctacttggtcccccaggg
aatcctgggccaccaggaccacttggtttcccaggtcccacaggttcccttggacctcaa
ggcatgagaggagatgacgggacagatggaggaactggaccatcaggacaccaaggatgt
gttggagataatggtgaccctggtcaacctggaatcaacctggacggaccaccaggactc
cctggaccaccaggctctccaggctggccgggacctccaggagacaccttcaacaccgga
cctggtcccattggtccacctggactacctgggttactgggacccaagggagatcctggt
ttgccaggcatccctgggcctccagggggactaggcccgtgcggaggtgtgggttacaag
gggtcaaaaggagacactggggacccaggaccgagcggtcccccagggccaatagaatgt
agagagaaaggagctgttggcccaccgggagcctcaggaccaccaggagtcaggggccca
tcgggtttccgtggtgataaaggacgtaagggtgcgatgggtcctcctggacgtggagtg
aagggaccagcaggggtccccgggcctccaggtcccccgggccccgttggtgccaagggt
ttcagtgggtcaccaggtgacccgggcttccctggtgtaacagggaccaaagggcccagg
ggatatcctggtagagatggatcggctgttcctggtacaccgggtcggcctggaaaccca
ggatcccgcgggaggcaaggggagaggggttttacaggacgtgacggtcaggatggagac
caggggtacaaaggagccaaaggtcatagaggtccccccggaagtcctggaccagtagga
gtcataaccattaaaggacagaagggctctgaaggaccaccaggagaggacggcttcact
ggacccagaggttccaagggtccaagtgggtcaccaggtaaaccaggggggaatggacag
gatggtccccctggatatgagaaagggctcccaggacaacctggcagacctggtcccccc
ggaccccccggacctcgaggacctaaaggcttgagtggtatagtgggtttccctggacca
gtcggtgataagggggaccctgggcacacaggacctcctgggaacccaggccttccagga
acgacaggcttaccgggtgacccaggagactccataggacaaccaggactacctggacca
ccgggtcctccaggagaaagcagaaccttagcttcaaagggggacccaggagatccaggg
gccccaggacccagaggatcaccaggacagcctggtgtccacggagcccgaggcccacta
ggtggcccaggttttcctggtccctcaggtccgccgggtcgcccaggctccccagggcct
cccggaggaattctcggaggtcaaggtcccaagggcaatcctggacagcccggtcctcca
ggttttccgggacccccaggtctgcatggtctgaacgggctacaaggccaaaaaggagag
aagggagcaagaggaccagatgtgttgggcccacgagggccatctgggttccccggagtc
aaaggccacacaggctcccagggacccccgggaacttcttaccccggacctaaaggccta
aggggccctccaggctaccaaggaccaaaaggactcgctggtgagcccggtggttcaggt
ggagagtgcacagaatgtcacagaggacccaacggagaaccaggatacgaaggcattcac
ggacctccaggaccacccggtgaaccgggtcctgctggtactgcagagccatctccagga
gacccaggcccccaagggccaccagggcccaatggccataaaggacagagaggcccccca
ggacccctagggccaacagactactcaggatcacaaggacccaaaggtgccagaggccct
gagggtcacatgggccccaacggaccaagaggtcgtccaggcgcctatggcctcctgggg
cccaaaggtgacaaaggcagacctggggatgcaggtcccaaaggcctgcccggtcaggtt
ttggatggtgtcgttaccactcaggaaccccaccgtgggatccatggcccctcaggtcca
ttaggtccaaatgggcccccgggaaaggctgggccccgtgggaaccctgggcctcacggt
cctaagggcccggctgggtcacgagggcccccagggagaaatggacctccaggtccacct
ggacctttaggagacccaggcgatcatggacagcaaggttttgtgggacatcagggtcct
ccgggttctcagggtgaccgtggctaccctggttccactggctctgtgagttcaggcttc
ctgctggtgatccacagccagtcagtggaggtccctgtgtgtcccgagggcagcagcccc
ctgtggaccggctacagcctgttctacctggaggggcaggagaggacacacacacaggac
ctgggccaggccggctcatgtctgcgtatcttcagcaccatgcccttctcctactgcaac
acaggtacctgtgactacgccagccgcaacgataagtcctactggctttccaccaccgct
gccgtgcccatgatgcccgtgtcgggccacgacatccgcgcccatatcagccgctgtgcc
gtgtgtgagacaccctcgcccgctgtggcagtgcacagccaggattatatcgcccccacc
tgcccgcctgggtggaggagtctgtgggctggctactccttcctcatgcactctggagcg
ggcgacgagggtggcggccaatctctgacctcatccggcagctgcctgcgagacttccgt
gcccagccctttgtggagtgccagggcccgcggggcacatgccactacttcgccaatgtc
tacagcttctggctgacccacgtttccctggacgagcagtttggccccggccccgtccct
agcgtgttgaaggccgccgatcaacagcgccagcaggccagccgctgccacgtgtgcacc
aagggctga
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