Salmo trutta (river trout): 115170213
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Entry
115170213 CDS
T08542
Name
(RefSeq) LIM and calponin homology domains-containing protein 1-like isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
stru04990
]
115170213
Domain-containing proteins not elsewhere classified [BR:
stru04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
115170213
BRITE hierarchy
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Paralog
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GFIT
Motif
Pfam:
DUF4757
CH
LIM
Syntaxin_2
Motif
Other DBs
NCBI-GeneID:
115170213
NCBI-ProteinID:
XP_029582470
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All DBs
Position
3:21883104..22036002
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AA seq
1309 aa
AA seq
DB search
MASPAADRGQPHQRHPLSESASEPAFLEAQKWIEAVTGRCFNDKDFRGGLENGILLCELL
SSIKPGLVKKINRLPTPIAGLDNLSVFLRGCEELGLKGSQLFDPGDLQDISTRPNANRVA
DCSRKLKNVLITIYWLGRAANSCTSYNGPTLDLKEFEGLLSQMRKEAEDTESPQRSIRDS
GYIDCWDSERSDSLSPPRHGREDSFDSLDSFGSRSRQTPSPDVLVARGIGSDGRGSDSES
DAGPHGGRKLPDVRKDDMLARRTSVSEPRVMVPFNQYLPNKSNASGYVPTPLRRKRGDHE
GREEGSGGGGGSRKSWSTATSPIGGDIPFSSPARSCSEELYRPSSLTTSPMTTAIIVTSP
LSPRASLDTTRKFPPMIYRKEAGQKKVGLSISLATDTGRNDDVWARRALTSPKHGGTTGP
NQFLPVPSAGATTTLTITCQGRMGKSEVEGRKGDKPAVGKCPSWLDDDPPPIFSHRAASV
SDDPESVSMIDMRCEEDAILPHHSQVRHELMHNQYNMMKEEEDHWQDDLARWKSRRRSVS
QDLIKKEEERKMMEKLMTGEGGAISQRRKSIKTYREIVEEKERRENDLREAYRLARTPEE
AALVLHRYAQRFTISEAVLERLQLPKLLDRSISEDPTATTNTRLTLTPTSCSPTPTSPEE
DTNGPLKYLRQQSLPAPKFTATVEAQVVGFPQGLSHRPQIRSRKPEPNPSIRAVSPKSVP
LLMPKPYNQPKGLQMLVGPRPGKVDGLLRVNGDMGNDEVTTPESEGRTSPLRFYPSPATP
TASSDGPDIPPCEATPTPPPTHSPSPRASPLPAMPAVAQCGTSTGTAVISSSVPGESDAQ
EKGNAQESTPPSRPTSLPSELQSTECLVEAGGRSTAGPLGEEPNTTETAVQPSPATESQQ
APKEQAELCMNATATRQIATVLHPVLSEHATQQAQPMTAPVSEPSLESSQRADEVATLAD
PGPVRNKPPCEAPTTEGAEQEHGTAAVTQVSSPVVAQAKRGDRWSWDPNEERKRQERWQQ
EQERMLQEKYQHEQEKLKQEWERAQREVEEEERRYHEEERRILEETVAPLTPLSSTLASP
IRGDAPAPIDPQDTIVRSLADWERKQELLERQGGSTERVVWKGQDNDRSSDISTASRDES
LKTAVSSISQNSSQADKLTPSLQNGQRAPPTMAVPQPPNKKQNTEVLLDCTKPSPQAPSR
DRRCGSIESMGPSPSNSPTTCPSDMPQSPNRSVSGKKLCSSCSHPLGKGAAMIIETLSLY
FHIQCFKCGVCKGQLGDTTTGTDVRIRNGLLNCHQCYIRSRSAGQPTTL
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtcccgctgcagatagaggacaaccacaccagcgacatcccctctccgaatcg
gcctcggagcccgcgtttctagaagcgcagaaatggattgaggcggtcacaggcagatgc
ttcaatgacaaggacttcaggggaggcctggagaatgggatcctgctgtgcgagttgctg
agctccatcaaacctggcttggtgaagaagatcaacaggttacccactcccatcgctggc
ctggacaacctgagtgtgttcctgcgtggctgcgaggagctggggctgaagggctctcag
ctgtttgaccctggggacctgcaggacatctccacacggcccaacgccaacagggttgcc
gactgcagtaggaaactcaagaatgttctcattaccatatactggctgggccgggctgcc
aacagctgcacctcctacaacgggcccacactggacctgaaggagtttgaaggcctgcta
tcacagatgcgaaaggaggcggaggacacggagagcccccaacgcagcatacgggacagc
ggctacatcgactgctgggactcggagcgtagcgactcactctccccgcctcgccacggc
cgagaggactccttcgacagcctggactcattcggctcacgctccagacagacgccctcg
ccggacgtactggtcgcccgcggcatcggcagtgatggccgtggcagtgactccgagtcc
gacgccggaccccacgggggcaggaagctgccggacgtgcgcaaagatgacatgctggct
cggcggacctcggtgagcgagccccgagtgatggtgcccttcaatcagtacctgcccaac
aagagcaacgccagtggctacgtgcccacaccgctgcgcaggaaaaggggtgaccacgag
ggccgggaggagggcagtggcgggggtgggggcagccgcaagagctggagtactgccacc
tcgcccataggaggcgatatacccttcagtagccccgcccgctcatgctccgaggaacta
taccgtccgtcatccctgacaaccagccccatgactaccgccatcatcgtgacgagcccc
cttagccccagggccagcctggacacaaccaggaagttccctcccatgatttacaggaag
gaggcagggcaaaagaaggtggggctgtccatatccctagcgacagacacggggaggaat
gacgacgtatgggctcgccgtgcccttacctcgccaaaacacggcggcaccactggtcca
aaccagttcctgcctgttccttcagccggggcaaccaccacgctgaccatcacctgccag
ggtcgcatgggcaagtcggaggttgaaggtcgcaaaggcgacaaaccggcggtggggaaa
tgtccatcttggcttgacgacgaccctccgccaatattcagtcacagagctgctagtgta
tcagatgacccagagagtgtgagtatgattgacatgcgttgtgaggaggacgccatcttg
ccacaccacagccaggtgcgccacgagctcatgcacaaccaatacaacatgatgaaggag
gaagaggaccactggcaggacgacctagcccggtggaagagtcgcaggagaagcgtctcc
caggacctgattaagaaggaggaagagaggaagatgatggagaagctgatgacgggtgag
ggaggggccatctctcagaggaggaagagcatcaaaacctaccgggagattgttgaggag
aaggagcgtcgtgagaacgacctccgcgaggcctaccggttggcccgcacccctgaggag
gcggcgttggtcctccaccgctacgcccagcgcttcaccatcagtgaagcggtgctggag
cgcctgcaactgcccaaactgctagacaggagcatctctgaggatcccaccgctaccacc
aacacacgtctcaccctcacccccacttcctgttctcccacccccacctccccggaagaa
gatacaaatggccccctgaagtacctgaggcagcagtcgctcccggcacccaagtttacc
gctactgttgaggcccaggtggtggggttcccccagggtctgtctcatcgcccccagatt
cggtcgcgcaagcctgaaccaaacccctctatccgggccgtctcacccaagtctgtgcct
ttgctgatgcccaagccttacaatcaacccaagggcctgcagatgctggtgggacccagg
ccaggcaaggtggacggcttgctgcgagtgaacggcgacatgggaaacgatgaggtcacc
actccagagagcgagggaaggacctcccctctacggttctacccctcccctgccacgcct
acagcctcctctgatggtcctgacatacccccatgtgaggccactcccactcccccaccc
acacatagcccctctcccagggcgagcccattaccagccatgccagctgtggcacagtgt
ggcacaagcacaggcaccgcagtgatatcttcttcagtgccaggagaaagtgatgcccag
gagaagggtaatgcacaggagtctaccccgcctagccggcccacctcactgccctcggag
ctgcagagcacagagtgtctcgtggaggcgggaggcaggtctactgcaggcccgctgggg
gaggagcccaacacaacagagactgcagtacagccctctccagctacagagtcacaacaa
gctcccaaggaacaagcagaattgtgtatgaatgccacagcgactagacagatcgccact
gtcctccatccagtcctatcagagcacgccacacaacaggctcaaccaatgaccgcaccg
gtcagtgagcccagcctggagtcgtctcagagagcagatgaagttgctaccttggctgat
ccaggacctgtcagaaacaaaccaccatgtgaagctcccacaacagagggggcagagcag
gagcatggtacagcagcggtcactcaggtgtcatccccggtagtggcccaggctaagcgg
ggtgaccgctggtcttgggacccaaatgaggagcgaaagcgtcaggaaaggtggcagcaa
gagcaggagcgcatgcttcaggagaagtaccagcatgagcaggagaagctgaaacaggag
tgggagagggcgcaaagagaggtggaagaggaggagaggagataccatgaggaggagcga
aggatactagaggagactgtggcccccctgacccccctctcctccaccctggcctcgccc
atccggggggatgcccccgcgcccattgacccccaggacaccatcgtccggtcgctggcc
gactgggaacgcaagcaggagctgctggagaggcagggggggagcacagagagagtggta
tggaaaggacaagataacgacaggagtagtgacatcagcacagcgtccagagatgagagt
ctgaaaacagcagtcagctcaatcagccagaacagcagtcaggcagacaagctgacgccg
agtttgcagaatggtcagagagcaccacccaccatggccgttccccagccccccaacaag
aaacaaaatacagaggtcttactagactgcaccaaacccagcccgcaggcgccctctcgg
gacaggaggtgtggctccattgaatccatggggcccagtccatcaaactcacccaccaca
tgcccatccgacatgcctcaatctccaaacaggtcggtgagcggtaagaagctgtgctcc
agttgcagtcaccctttgggaaaaggggcagccatgattattgagaccctcagcctttac
ttccacatccagtgctttaagtgtggggtctgtaagggacagctgggtgacaccaccacg
gggacagacgtgaggatccggaacggcctcctcaactgccaccagtgctacatccgctcc
cgctcagccggccagccaaccacattgtga
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