Salmo trutta (river trout): 115170883
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Entry
115170883 CDS
T08542
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115170883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115170883
03041 Spliceosome [BR:
stru03041
]
115170883
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115170883
Spliceosome [BR:
stru03041
]
Complex B
Other components
Prp19-related factors
115170883
Complex C
115170883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_8
TPR_12
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
NRDE-2
LTN1_E3_ligase_6th
SNAP
Motif
Other DBs
NCBI-GeneID:
115170883
NCBI-ProteinID:
XP_029583087
Ensembl:
ENSSTUG00000011057
UniProt:
A0A673Y0E3
LinkDB
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Position
32:complement(5623337..5638086)
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AA seq
851 aa
AA seq
DB search
MPSLNGKPDVMFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGIKSILNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVAQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSCSKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSLSDYYIRSGHFEKARDVYEEAILTVVTVRDFTQVYDSYAQFEES
MIAAKMETTSEMGKDEEEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVDNTERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTNATGTISDLAPGQMGLDDMKLLEQQAQLLAAEAEQ
DKPKLKEKILFVRSDTSRSELAELAKQANPDEIDIDDEDEDVDEDQGPEEVQLEQKSVPT
AVFGGLKEEED
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgccctctctaaatgggaaaccggacgtcatgtttgaggaagatgacctgccttatgag
gaggagatcattaggaatccgtactcggtcaagtgctggatgcgctacatcgagttcaaa
cagaatggaatcaagtccatcctcaacatgatctatgaacgagctctgaaagagctacct
ggcagttacaagttatggtacaactacctgagagagagacggaaacaggtcaaagggaag
tgtatcacggagccagcctacgaggagatcaacaactgccatgaaagagcactggttttc
atgcacaagatgccgaggatctggctggactactgccagttcctggtggctcagtgtaag
atcaccaggagcagacgcacgtttgaccgagcactccgagccctgcccgtcactcagcac
cctcgcatctggcccctgtacctccgctttgcccggaacctgcccctgcctgagaccgcc
atccgtgtctatcgcaggtacctcaagctgtccccagagaatgcagaggagtacatagat
tacctgcgttcctgcagcaagctggatgaagcagcagtgcgtctggcagccgttgtcaac
gatgagagctttgtatccaaagagggcaagtctaactaccagctatggcacgagctgtgt
gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggccatcatccgt
ggaggcctcactcgtttcacagaccagctgggcaaactctggtgctccctgtctgactac
tacatccgcagtggacattttgaaaaggctcgtgatgtgtatgaggaggccatcttgacg
gtggtgacggtgagagatttcacccaggtgtacgacagctacgcccagtttgaggagagc
atgatcgctgccaagatggagactacctccgagatggggaaagatgaagaagaggacata
gacctggagctgcgtctggcccgctttgagcagctgatcgcccgcaggcccctcctgctg
aacagtgtgctgctgagacagaacccccacaacgtccacgaatggcataagagggtcaaa
ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagactgtg
gaccctatgaaggctacagggaaacccagctctctctgggtctccttcgccaagttctac
gaggagaacgagcagctagacgacgcgcggaccatctttgagaaagccaccaaggtgaac
tacaagcaggtcgacgacctggctggcgtgtggtgtgaatacggagagatggagctacga
catgagaactacgaacaggcgctacgtatattgaggaaagcaactgctatcccgtccaag
aaggcggagtactttgacgtgtcagagccggtgcagaacagagtgtacaagtctctgaag
gtctggtccatgctggctgacctggaggagagtatgggaaccttccagtccaccaaggcg
gtgtacgaccgcatcattgacctgcgcatagccacgccccagataatcatcaactacgcc
atgttcctggaggagcacaactactttgaggagagcttcaaggcgtacgagcgcggcatc
gccctcttcaggtggcccaacgtctatgacatctggaacacctacctcaccaagttcatc
gaccgctacgggggcaagaagctggagagggcccgggacctgtttgagcaagcgctggat
ggctgtccagccaagttcgccaagaccatctacctgctgtacgccaaactggaggaggag
tttgggttggcgcgtcatgccatggcggtgtacgaaagagccacgcaggcggtggacaac
acggagaggcatcacatgttcaacatctacatcaagagggctgcagagatctacggcgtc
acctacaccagagctatctaccagaaagccatcgaggtgcttccagacgaacactccagg
gacatgtgtctgcgcttcgctgacatggagagcaaactgggcgagatcgaccggggacga
gccatatactcctactgctctcagatctgtgacccaaggatgacggccacgttctggcag
acgtggaaggagtttgagatccgccacgggaacgaagacactattcgggagatgctgagg
atcaagcgtagcgtccaggccacgtacaacacacaggtcaacttcatgtcctcacagatg
atgaaggccaccaccaatgccaccggcaccatctcagatcttgccccgggccagatgggg
ctggatgatatgaagctgttggagcagcaggcccaactgctggccgccgaggctgaacag
gacaaacccaaactcaaagagaagatcctcttcgtcaggagtgacacgtcacgcagcgag
ctggctgaactggccaaacaagccaaccctgatgagattgatattgatgatgaggatgag
gatgttgatgaagaccagggcccagaagaggtgcagctggaacagaagagcgtccccacc
gctgtctttggagggctgaaagaagaagaagattga
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