Salmo trutta (river trout): 115171314
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Entry
115171314 CDS
T08542
Name
(RefSeq) transcription factor Sox-10
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115171314
Transcription factors [BR:
stru03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115171314
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sox_N
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
115171314
NCBI-ProteinID:
XP_029583874
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All DBs
Position
32:complement(18157930..18166465)
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AA seq
496 aa
AA seq
DB search
MSGEEQSLSELEMSPGVSDDGHSLSPGHSSSAAGGGDSPLSGPQPQLTGVGDDALSDVAG
GISIKSDEDDDRFPIGIREAVSQVLNGYDWTLVPMPVRVNSGSKSKPHVKRPMNAFMVWA
QAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKKPFIEEAERLRKQHKKDYPEYKYQP
RRRKNGKPGSGSEADGHSEGEVSHSQSHYKSLHLDVAAHVGGAGSPLADGHHPHTAGQSH
SPPTPPTTPKTELQSGKSGDGKREGGVVGGSRGGMGVGAEGGSGSGSGKPHIDFGNVDIG
EISHEVMANMEPFDVNEFDQYLPPNGHPGIGQSAGSAVAAGSSASPYSYGISSALAAASG
HSAAWLSKQHQQHHASPLGSDPSKAQIKSEAGSGGHFAEASSGGSHVTYTPLSLPHYSSA
FPSLASRAQFAEYADHQASGSYYAHSSQASGLYSAFSYMGPSQRPLYTAITDPSSLPQSH
SPTHWEQPVYTTLSRP
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggagaggagcagagtttatctgagttagaaatgagtccgggggtctcggacgac
ggtcactccttgtcaccgggtcactcctccagtgccgcaggcggaggagactcacccctg
tccggtccgcagccccagctgacaggggtcggcgacgacgccctatccgatgtagctggc
gggatttccatcaagtccgatgaagacgatgatcgctttcccattggtatccgcgaggca
gtgagccaggtgctgaacggctacgactggacgctcgtgcctatgcctgtgcgtgtaaac
tccggcagcaaaagcaagccgcacgtgaaaaggcctatgaacgccttcatggtctgggca
caggccgcacggagaaaactggcagaccagtatccgcacctccacaacgctgagctcagc
aaaaccctcgggaaactatggaggctcttgaatgagagcgataagaagcctttcatcgag
gaggcggagaggctgcggaagcagcacaagaaggactacccggagtacaagtaccaacca
cgccgccgcaagaacggcaaacccggctcgggctctgaagctgacggccactctgagggt
gaggtcagccatagccaatcgcactacaagagcctccacctggacgtggcggcccacgtc
gggggggcggggtctcctctggctgatggacaccacccacatactgcaggccagagccac
agccctcctacaccacccaccacccccaagacggagctccagtctgggaagtcgggtgat
gggaagcgggagggcggtgtagtagggggctcccgtgggggaatgggggtaggagcggag
ggtggctctggatcagggtcaggcaaaccacacattgatttcggcaacgtggacatcggt
gagatcagccacgaggtgatggccaacatggagccctttgatgtgaacgagtttgaccag
tacctgccccccaatgggcacccggggattggacagagtgctgggtcagcagtagcagca
gggtcctctgcatctccctattcctacggtatctcctctgccctggccgcggccagtgga
cactctgcagcgtggctatccaaacagcaccagcagcatcatgcctcacctctgggctcc
gacccctccaaggcccagattaagagtgaggccggctcggggggacactttgccgaagca
tcctcagggggttcccatgttacctacactcccctcagcctgccccactacagctctgct
ttcccctcgctggcctccagggcccagtttgcagagtatgctgaccaccaggcctcggga
tcctactacgcccactccagccaggcctcagggctgtactctgccttctcctacatgggg
ccctcgcagaggcccctgtacacagccatcactgacccgtccagcttgccacagtcacac
agccccacgcactgggagcagcctgtctacaccaccctgtcgcggccctga
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