Salmo trutta (river trout): 115171385
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Entry
115171385 CDS
T08542
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115171385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115171385
03009 Ribosome biogenesis [BR:
stru03009
]
115171385
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115171385
Spliceosome [BR:
stru03041
]
Complex A
U1 snRNP components
U1 related factors
115171385
Complex B
115171385
Ribosome biogenesis [BR:
stru03009
]
Eukaryotic type
Pre-60S particles
Helicases
115171385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
115171385
NCBI-ProteinID:
XP_029584002
Ensembl:
ENSSTUG00000006014
LinkDB
All DBs
Position
32:20795132..20800638
Genome browser
AA seq
617 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGGGKFGNPGDRLRKKHWNLDELSKFEKNF
YQEHPDVTRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPT
PIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE
LAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTN
MRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYV
QINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEIT
RRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDY
PNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRG
GHSRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNTQSGGYGAS
GFDKSGNGFGGSYGTNGQSNYGASQAGAFPTQNFQAPQFSANQGGAQSGMSHQQFPFTQQ
QAPQPMVPYPMPLQFPQ
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggtagagatagaggttatggcagcggaccaccc
cgttttggaggcggtggaagaggtggtggtggtggtggggggaagtttggcaatcccggt
gatagactgcgcaagaagcactggaaccttgacgaactctctaaatttgaaaagaacttt
taccaagagcaccccgatgtcactcggagatctccgcaagaggttgcacagtacagaagt
actaaagcggttactgtgaaggggagggactgccctaatccaattatgaagttccatgaa
gccagttttccaacctacgtgatggatgtcattaacaaagcaggctggtcagaaccaaca
ccgatccaagcacagggttggccactggcgttgagtggcaaggacatggttggtattgca
cagacaggctctgggaaaactctctcgtacttgttgcctgcaatcgtgcacattaatcac
cagcctttcctggaacgtggagatggccctatttgcttagtgcttgccccgacccgtgag
ctggctcagcaggtccagcaggtggcagcagagtatggcagagcttctcgcctgaagtct
gtctgcgtttatgggggcgcgcccaaagggccacagctccgtgacctggatagaggtgtg
gagatttgcattgccacacctggcaggcttattgacttcctggaggcaggaaagaccaac
atgcgcagatgcacttacctggtcctggatgaggctgaccgaatgctcgacatgggtttc
gaaccacaaatccgaaaaattgtggaccaaatcagacctgaccgacagacactgatgtgg
agtgccacctggcccaaagaggtgcgccagctggcagaggacttcctgaaggactacgtc
cagattaatgtgggagctctgcagctgagtgctaaccacaacatcttgcagatcgtggat
gtttgcaatgatggcgagaaagaagacaaactcctccgcctactagaggagatcatgagt
gagaaggagaacaagaccataatctttacagagaccaagaggagatgtgacgagatcact
aggaggatgaggcgggatggttggccagcaatgggcatccatggagacaagagccagcag
gagagggactgggtgctcaatgagttcaagttcggaaaggcgccaattctcattgccaca
gacgtcgcctccaggggtctagatgttgaagacgtgaaatttgtcatcaactttgactac
cccaacaactctgaggactatatccaccgcatcggcagaactgcccggagccaaaagact
ggcacagcctacaccttcttcacccccaacaacatgaggcaggccagcgacctcgttgct
gtgctccgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagagga
ggtcattcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacaggtac
tcctccgggggcaggcgtgacttcagtagctttagggacagggaaaacgatagaggtttt
gacagtggaccaaagaaggtctttggcacaaatacacagagcggaggctatggggcaagt
ggctttgacaaaagcggcaatggttttggcggcagctacggcaccaatggccagtcaaac
tatggtgccagccaggccggggcattcccaacgcagaacttccaggccccacagtttagt
gccaaccagggaggtgcacagagtggcatgagccatcaacagttccccttcacacagcaa
caagcaccacagcccatggtgccttacccaatgccccttcaattcccacagtaa
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