Salmo trutta (river trout): 115171401
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Entry
115171401 CDS
T08542
Name
(RefSeq) aly/REF export factor 2-like isoform X1
KO
K12881
THO complex subunit 4
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
stru03040
Spliceosome
stru05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115171401
09122 Translation
03013 Nucleocytoplasmic transport
115171401
03015 mRNA surveillance pathway
115171401
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115171401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115171401
03041 Spliceosome [BR:
stru03041
]
115171401
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115171401
TREX complex
115171401
Spliceosome [BR:
stru03041
]
Complex C
Other components
EJC/TREX
115171401
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115171401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
GRP
DUF5549
Motif
Other DBs
NCBI-GeneID:
115171401
NCBI-ProteinID:
XP_029584038
Ensembl:
ENSSTUG00000007598
LinkDB
All DBs
Position
32:21484242..21487657
Genome browser
AA seq
305 aa
AA seq
DB search
MVSFMDGAVDFPLLLHTYFYLHISSNVSHNSIKMAWFQNGRSDGCHPCSGQVVGLLYFAS
SLSENGHLTHQSQLMAFKEQFKQITTQLESTLTQSTTAPYGWMSSAYYSRWGWPPGEPLV
EEQMPKQLPDKWQHDMYGNHGFNASVGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFG
TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQRR
PPMQGMNRGGGMNRARGGGFRGMQRGRGAGRGGRGRGGRGGSTKPLSAEELDAQLDAYNA
RMETS
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcctttatggatggagcagtggactttcccctcttattacatacatatttttat
ctccacatttctagtaatgttagtcacaactcaatcaaaatggcgtggtttcaaaatgga
cgctcagatggttgccatccatgttcaggccaggtagttggcctactttattttgctagt
tctctttcagaaaatggacacttaactcatcaaagccaactcatggcttttaaagaacaa
tttaagcaaataaccacacagctggagtcgacactgacgcaaagtactacagcgccatac
ggatggatgtcttcagcatactactctcgctggggatggccgcctggagagcctttggtg
gaggagcagatgcccaagcagcttcctgataaatggcagcacgacatgtacggcaatcat
ggcttcaatgccagtgttgggggtggcgctggtgtggaaaccggagggaagcttcttgtc
tccaatctcgactttggtgtttcagacgcagatattcaggagctctttgcagagtttggt
acactgaagaaggcagctgttcactatgaccggtcgggcaggagcttaggcactgcagat
gtccactttgagaggaaagcagatgctctaaaagctatgaaacagtacaacggtgtacca
cttgatgggcgtcccatgaacatacagctcgtcacatcacagatcgacacacaaagacga
ccacccatgcagggtatgaaccgaggtggtggcatgaacagggctcgtggcggtgggttt
agagggatgcagagaggacgtggagcaggtcgtggaggcaggggccgaggtggccgtggg
ggaagcactaagccactttccgctgaagagctggatgcccagctagatgcctacaatgcc
aggatggaaacaagctaa
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