Salmo trutta (river trout): 115171525
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Entry
115171525 CDS
T08542
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115171525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115171525
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115171525
Spliceosome [BR:
stru03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
115171525
Complex B
115171525
Complex C
U2 SnRNP specific factors
115171525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
115171525
NCBI-ProteinID:
XP_029584308
Ensembl:
ENSSTUG00000010932
UniProt:
A0A673XV80
LinkDB
All DBs
Position
32:complement(24795298..24802788)
Genome browser
AA seq
929 aa
AA seq
DB search
MNWSKGGPSGKRGFGFGGFSLGGGGGGGGKKEELRVPQKSHTSFGGAGTAGGYGKNQQLP
AFYKIGTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRQQFQSGGGSDSEDDPLDA
FMAQVEDQAAKDMKKLEEKEKEKKVEKGIRDDIEEEDEQEAYFRYMAENPTAGLTAEDED
ENIDYDSDGNPIAPTTKKIIMPLPPMDHSEIDYPPFERNFYNEHEELLSLTGTEVFELRH
KLNLRVSGAAPPKLSTSFAHFGFDEQLMHIIRKSEYTQPTPIQCQGVPIALSGRDMIGIA
KTGSGKTAAFIWPMLVHIMDQKELETGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRS
VAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGF
EYQVRSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQIVEI
MPSGVEKWGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGHSLGLLHGDMDQSER
NKVIADFKKKSLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGV
AYTLLTSKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGNGKKLNIGGGG
LGYRERPGLGAESSERSGGAAMGNYEGYSKPTGAMGDRMSAMKSAFQSQYKNHFVAASGM
VPKLTTKSSSSSGWTSAGSLSSVPTGAPEGPDRPRGSPSLAMAPPAALGMGTKMAGFTSA
GSLSSVSDSQATAPQGYATPPSPREGPRDRHGDDRSRHGDGHYRDRRDRSERHSGGGERD
RHGERDRHADRDRYGDKDRHGSSGRHGDSRNGDGSRRDRERDDCRGDRESGDRAGSEGRG
DRAEGRGDREEDGFAVPDPPKRKKSRWDN
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagcaagggtggcccaagtggtaagcgagggttcggttttggaggattttcc
cttggtggtggtggtggaggaggcggaaagaaagaagaactgcgcgtgcctcagaaatcc
cacacgtccttcggaggcgcagggacagctggaggttatggcaagaaccagcaactccca
gcattctacaagataggaacaaaaagagcaaattttgatgaagagaatgcgtattttgaa
gatgatgaagaggagtcaagcagcacagatttgccatatatcccagctgagaactccccc
acacggcaacaattccagtctggagggggctcagacagtgaggatgatcctctggatgcc
ttcatggcccaagtggaggaccaagcagctaaagacatgaagaaactggaggaaaaagag
aaggaaaagaaggttgaaaagggtatacgtgatgacattgaagaggaagatgaacaagaa
gcttacttccgctacatggcagagaatcccacagctgggctgactgcagaggatgaggat
gagaacatagactacgacagtgatgggaatcccattgcccccaccactaagaagatcatc
atgcccctgcccccgatggaccactctgagattgactacccaccttttgagaggaacttc
tacaacgagcatgaggagcttctcagcctgacaggcacagaggtgtttgagctgagacac
aaactcaacctgcgggtgtctggtgccgcccctcctaaactctccaccagcttcgcccac
tttgggtttgacgagcagctgatgcacataatccgcaagtcggagtacactcagccaaca
cctattcagtgccagggagttcccattgccctgagtggacgtgacatgattggcattgcg
aaaactggtagtggcaagactgcagccttcatctggcccatgctagttcacatcatggac
cagaaggaactagagactggagaggggcccatcgcagtcatcgtgtgccccaccagggag
ctctgtcagcagatccacgcggagtgtaagcgttttgggaaagcctactccctgcgctcg
gtggcggtgtatggaggaggcagcatgtgggagcaggccaaggctcttcaggagggggca
gagatagttgtgtgcaccccgggtcgtctgattgaccatgtgaaaaagaaggccacctct
ctacaaagagtgacatacctggtgtttgatgaggcagatagaatgtttgatatgggcttt
gagtatcaagtgagatccattgccagccatgtccgacctgatcgacagactcttctgttc
agcgccaccttccgtaagaagattgagaggctggctagagatatcctggtggaccccatc
cgtgtggtgcagggagacatcggggaggccaatgaggatgtgacccagatagtggagatc
atgcccagtggggtggagaagtggggctggctgacccgccgcctggtggagttcacctcc
tctggctctgtacttatcttcgtcaccaagaaggccaactgtgaagagctggccaccaac
ctgacccaggagggccacagcctgggcctgctgcacggagacatggaccagagtgagagg
aacaaggtcatcgctgacttcaagaagaagagtctgcccgtgctggtggccaccgacgtg
gcagcccgtggtctggatatcccttcaatacgcacagtagtgaactatgacgtggctcgg
gacatcgacacacacacacaccgcattggccgaacaggtcgtgctggagaaaagggtgtt
gcctacacccttctcaccagtaaagacacatcatttgcaggagaccttgtgcgtaacctg
gagggagccaatcaaagcgtctctaaggaactgatggacttggcaatgcagaatccctgg
ttcaggaaatcacgcttcaagggcggcaatgggaagaagctaaacattggaggaggtggt
ctgggctacagagagaggccaggattgggagctgaaagttctgagcgtagtggtggtgct
gccatgggtaactatgagggctacagcaagcctaccggagccatgggagaccgcatgtca
gcaatgaagtcagccttccagtctcagtataagaaccactttgtggcagcatccggcatg
gttcctaaactcaccactaagtccagtagctcttcaggctggaccagtgctggaagtctg
agctctgtccccaccggggcccctgagggcccagaccggccccgtgggtccccctcctta
gccatggcccctccagcagccctcggcatgggcaccaagatggcaggcttcaccagcgcc
ggctccctgagctctgtctcagacagccaggccactgctcctcaggggtatgccacccca
ccctcacccagggaagggccccgtgacagacatggtgatgacaggagtcgccatggagat
ggccactatcgtgacaggagagacaggagcgagcggcacagtggcgggggggagcgggac
cgccatggggagcgggaccgccacgcagaccgcgacagatacggggacaaggatcgccat
ggcagcagcgggcgccatggcgatagtcgtaatggagacggaagtagaagggacagggag
cgagacgattgtagaggtgacagggagagtggagacagggcagggagtgaaggaaggggg
gacagagctgaggggagaggagaccgagaggaagacggctttgcagtcccagatccacca
aaacgcaaaaagagtaggtgggacaactaa
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