Salmo trutta (river trout): 115171529
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Entry
115171529 CDS
T08542
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru02010
ABC transporters
stru04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115171529
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115171529
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
stru02000
]
115171529
Transporters [BR:
stru02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
115171529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
115171529
NCBI-ProteinID:
XP_029584320
Ensembl:
ENSSTUG00000005428
LinkDB
All DBs
Position
3:27589666..27633309
Genome browser
AA seq
2364 aa
AA seq
DB search
MILLLCVQVTHAWITSQDKNISKSSEEVWFSLGGNTLDAERGLISCLWEKFRAGGKLEWK
RSRVEMSISTQLGLLLWKNFTYRRRQTLQLLIEIVWPLLIFFILISVRLNYPPYEQHECH
FPNKAMPSAGTLPWIQGIICNANNPCFRNPTPGESPGVVGNFNESIISRLFSDAKKILLY
SQNDRNLDGFKGLIQALKTLQANTKGFKLKDFLHNNETLSTFLLRNASFSEHAVRQITEA
DVNLEKVLVKGFGVHLRDLCSSNGTRVEDFVTITDSKVSSLVQKMLCVSPGSWLNQAESH
FLHNLDFLKPIRKDVRADPEAVQQVAKATDKLLESLGSLALELASMKSWRDLRNEIIFLT
ENATSSPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHNTTNGEEPISAYD
NTSTPYCNAMMRNMESSPVSRMIWQALKPLLMGKILYTPDTPATQKIIHEVNRTFQELGV
LRELGGMWEEIKPKVWTFMESSEHMDLVRTLLKNNGTGSFFTSQLAGSEWTVEDVSNFLT
KHSQDTHPHGTAFTWREVFNETDQAIMSISRFMECVNLDKMEPVANEERMVNKSMALLDD
RKFWAGIVFPDIEANSSELPANVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYI
WGGFSYLQDIIEHSIITAVTGVKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWM
YSVAIIIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVVLLKMGNL
LPYSDPGVIFLFLGSFAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQD
YVGFGAKIVASLLSPVAFGFGCEYFALFEEQGIGIQWNNLFNSPMEEDDFSLTTAIIMMY
FDSFLYMVMTWYIESVFPGQYGIPRPWYFLFSKSYWFGEGDNRKTDFSQNKKKSCEAVCI
EEEPAHLKTGVFIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTG
LFPPTSGTAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQV
KSEIEQILIDTGLPHKRTSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARR
GIWDLLLQYRLGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLT
LVKKGPEPFLSSCRNSSSTVSLTKKEEDCPSESSSDAGLGSEHESEVATIETAQAASICE
SAFVPPDVSLISSLIFKHVPAARMVENLGHELIYVLPYGAAKDGAFVELFKDMDNRLPDL
GISSYGVSDTTLEEIFLKVAEDNGVDTEVPSDGTLPLRRRRRNHAFGGGNAFGGDHQSCL
RPQIDDDNNEHNDSDADPESRETDFLSGSDGKGSYKVKGWSLKRQQFVALIWKRFLYAQR
SRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDASTQ
RLLSALTEGPGFGTRCMEGQPIPDTPCTMGDEDWSIPEVPETLLELFRTGNWTMEEPSPV
CACSCDGRKKMLPECPAGAGGLPPPQMKISETDTLQNLTNRNISDYLVKTYAEIIGKSLK
NKIWVNEFRYGGFSLGARSTNVLPPADEIDDAIARVRKIFELEKGAAADRFLASLSSFIN
GLDTKNNVKIWFNNKGWHSMGAFLNVMNNGILRANLPPGKDPSKFGIRAFNHPLNLTKEQ
LSQVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTAN
FIWDMCNYIVPATLVIIIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKI
PSTAYVVLTSVNILIGINGSISTFVMELFGDNEIGGINNILKNVLLIFPHFCLGRGLIDM
VKNQAMADALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLFQYRFCLKPINLH
TKLPPVGEEDEDVARERQRIVNGLGHGDILELRQLTKVYKRKQKPVVDRLCVGIPPGECF
GLLGVNGAGKTTTFKMLTGDSMVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINELLT
GREHLEFYAVLRGVPEKEVCEVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMALIGG
PPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRF
RCLGSVQHLKNRFGDGYTIILRVAGADPDLPPVMKFIESELPGSTLKEKHRNMLQYQLPS
SLTSLAHIFSILAKNKDLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEAVV
DITPLSSRQAEDKLAEERLKESLV
NT seq
7095 nt
NT seq
+upstream
nt +downstream
nt
atgattctcctcctctgtgtacaggtcacacatgcctggataacaagccaggacaaaaat
atttcaaaaagtagtgaagaagtgtggtttagtttaggaggaaacacacttgatgctgaa
aggggtctgatttcgtgcctttgggaaaagtttagagctggagggaagcttgagtggaag
aggtccagagtagagatgtccatctcaactcagctgggcttgttgttgtggaagaacttt
acctacaggagaaggcaaacgctccaactgctgattgagatagtatggcccctattgatc
ttcttcattttgatatcagtgagactgaactaccctccgtatgaacaacatgaatgtcat
ttccccaacaaggccatgccctcggcaggcaccctgccctggatccaaggcatcatctgc
aacgccaacaacccctgcttccgcaaccccactcctggagagtcccccggggtcgtggga
aacttcaacgagtccataatctctcgtctgttctccgatgccaagaagatcttgctgtac
agtcagaatgaccggaatttggacggctttaaaggcctcatccaagccctgaagacacta
caggccaacaccaaaggattcaagctgaaggatttcctccacaacaatgagaccctgtcc
actttccttctgcgaaacgcttccttctcggaacacgccgtgcgccagatcactgaggcc
gacgtaaacttggaaaaggtgctggtcaaaggcttcggtgtccacctgagggacttgtgc
agcagcaacggcaccagagtagaggactttgtgaccatcacagacagcaaggtgtccagt
ctggtccagaaaatgctctgtgtgtccccaggctcctggctcaaccaggcagaaagccac
ttcctccacaacctggacttcctcaaacccatacggaaagatgtgagggctgaccctgaa
gccgtccagcaggtggccaaggctacagacaaactcctggagagcctgggctccctggcc
ttggagctggccagcatgaagagttggagagacctgcgtaacgagatcatcttcctcact
gagaacgctacatcctcccccagccacatgtaccaggctgtgtcgcgcatcgtctgtggc
catcccgagggtggcggactaaagatcaagtccctcaactggtacgaggacaacaactac
aaggctctgttcggcaaccacaacacaaccaacggggaggagcccatctctgcctacgac
aacacatccactccatactgtaacgctatgatgaggaacatggagtccagccccgtgtcc
aggatgatctggcaggccctgaagcctctgctcatgggcaagatcctgtacacccccgac
acccccgccacacagaagatcatccacgaggtgaacagaacattccaggagctgggggtc
ctcagagagctggggggcatgtgggaggaaattaagcccaaggtctggaccttcatggag
agcagcgaacacatggacctagtaaggaccctactgaagaacaatggcactggcagcttc
ttcacctcccaactggcgggctcagagtggactgtggaggacgtctccaacttcctgacc
aaacattcgcaggacacgcatccccacggcaccgccttcacctggagggaagtcttcaac
gagacggaccaggccatcatgagcatatcccgcttcatggagtgtgtaaacctggataag
atggagcccgtggccaatgaggaaaggatggtcaacaaatccatggcgctcctggacgat
aggaagttctgggcggggattgtgtttccagatattgaggccaacagctctgaactgccg
gccaacgtcaactacaagatccgcatggacatcgataacgtggagcgcaccaacaagatc
aaagacggatattgggaccctggtcctcgtgctgacccatttgaggacctgcgctacatc
tggggtggcttctcttacctccaggacatcatcgagcatagcatcatcacagcagtaact
ggcgtcaaggagaagacgggagtctacatccaacagatgccctacccctgctacgtggac
gacatcttcctgcgggtgatgagtcgctccatgcccctcttcatgaccctggcctggatg
tactctgtggccatcatcatcaagagcgtggtgtacgagaaggaggcaaggctcaaggag
accatgaggatcatgggattggacaacggcatcctgtggtttagctggttcatcagcagc
ctcatccccctgctcatttctgccggcctgctggttgtactgctcaagatggggaacctg
ctgccctacagtgaccccggcgtcatcttcctgttcctgggttccttcgccgtggtaacc
atcatgcagtgcttcctcatcagcacaatgtttgcccgtgccaacctggcggcggcatgc
gggggcatcatctacttcaccctctacctgccctacgtcctctgtgtggcctggcaggac
tatgtgggctttggggccaaaatagtcgctagcctgctgtccccagtggcctttggcttt
ggctgtgagtactttgctctgtttgaagagcagggcatcggcatccagtggaacaatctg
ttcaatagccccatggaggaggacgacttcagcctgaccaccgccatcatcatgatgtac
ttcgactccttcctctacatggtgatgacctggtacatcgagtccgtcttccctggtcag
tatggtattcccaggccctggtacttcctcttctccaagtcctactggtttggagaagga
gacaacaggaagactgacttcagtcagaacaagaaaaagagctgtgaagctgtctgtata
gaggaagagccagcccacctgaaaactggtgtcttcatagagaacctagtcaaggtgtac
cggcacgggaagaagctggctgtggacgggctgactctgggcttctacgagggacagatc
acctctttcttgggccacaacggagcagggaaaaccaccaccatgtcgattctaacggga
ctgtttcctcctacctctggcactgcttacatcatgggaaaagacatccgatcggagctg
agtgctattcgacagagtctgggcgtttgtccacagcacaacgttctcttcagcatgctg
accgttgaggagcacatctggttctatgctcgtctgaagggtctatctgaggaacaggtg
aagtctgagatcgaacagatcctgatagacactggcctgccgcacaaacgcacttccagg
acaagcacactgtccggagggatgcagaggaagctctctgtggctctggcctttgtcggg
gggtcaaaggttgtgattctggatgagcccactgccggggtcgacccctacgcccgcagg
ggcatctgggacctcttgctccaatatcgtctaggtcgtacaatcatcctctccacccac
cacatggacgaggcggacatcttgggcgaccgcatcgccatcatctcccacggcaagctg
tgctgcgtgggctcctccctcttcctgaagaaccagctgggtactggctactacctcacc
ctggtcaagaaaggcccagaacctttcctcagctcctgccgcaactcctccagtaccgtc
tccttaactaagaaggaggaggattgtccctctgagagcagctccgatgcaggccttggc
agcgaacacgagagcgaagtagctaccatagaaactgctcaggcagcttccatctgtgaa
agtgccttcgtgccccccgacgtctccctgatctccagcctgatcttcaagcacgtcccg
gccgcccgcatggtggaaaaccttggccacgagctcatctacgtcctaccctacggcgcc
gccaaggacggagccttcgtggagctcttcaaggacatggacaatcgcctccctgacctg
ggcatatccagctatggcgtctccgacaccaccctggaagagattttcctgaaagtggca
gaggacaacggagttgacactgaagttccctcagacggtacactccccctgcgcagacgt
cgtagaaatcatgcctttggtggaggaaatgcctttggtggagaccaccagagctgcctt
agaccccagattgacgacgacaacaatgaacataacgactcggacgcagacccagaatcc
agagagacagacttcttgagcggctcggacggtaaaggctcttacaaggtgaagggatgg
agtctgaagaggcagcagtttgtggccttgatttggaagaggtttctgtacgctcaacgc
tccagaaaaggtttctttgctcagattgtactccctgctgtgtttgtgtgcattgccctg
gtcttcagtctcatcgtcccaccttttggaaagtaccccagtctggagctgcagccatgg
atgtacgaagaacagtccctcttcatcagcgatgacgcccctgaagacgctagcacacaa
cggttattgagtgccctcaccgaaggtcctgggtttggaacgcgctgcatggaaggacag
cccatacctgacactccctgtacgatgggtgacgaagactggtccataccggaggtccca
gagacccttctggaactgttccgcacaggtaactggaccatggaggagccgtcccccgta
tgcgcctgcagctgtgacggccgcaagaaaatgctccccgagtgtcctgctggagccgga
ggactgccacctcctcagatgaagatcagcgagacagacaccctgcaaaatctgaccaac
agaaacatctctgactatctggtgaagacctatgcagagatcattgggaaaagtttgaag
aacaaaatctgggtaaatgaatttaggtacggtggcttctcattgggtgccaggagcacc
aacgtcctccccccagctgacgaaattgacgacgccatcgctcgagtgaggaagattttt
gaattggagaagggtgcagccgcagaccgattcctggcgagcttgtctagcttcatcaat
ggtctggacaccaagaacaatgtcaagatttggttcaacaacaaggggtggcacagcatg
ggagccttcctcaacgtgatgaacaacggcatcctgcgcgccaacctgccccctggcaag
gaccccagcaagtttggcatccgcgccttcaaccacccgctcaacctcaccaaggagcag
ctgtcccaggtggcactgatgaccacctcagtggacgtcctggtgtccatctgcgtgatc
ttcgccatgtcctttgtcccagccagcttcgtagtcttcctcatccaggagagagtgagc
aaggccaagcacatgcagttcatcagcggcgtgcagcccctgctttactggactgccaac
ttcatctgggatatgtgtaactacatcgtcccggcgacgctcgtcatcatcatcttcgtc
tgcttccaacaaaaggcctatgtgtcgtccaccaacctgccagtgctggccctgctgctg
ctcctctatggctggtctatcactcccctgatgtacccggcatccttcttctttaagatc
cccagcacggcctacgtggtgctgacctccgtcaacatcctcatcggcatcaacggcagc
atctccaccttcgtcatggagctcttcggagacaacgagattgggggtatcaacaacatc
ctgaagaacgttttgctgatcttccctcacttctgtcttggccgaggtctcatcgacatg
gtgaagaaccaggccatggccgacgctctggagagatttggtgagaaccgcttccgatcc
cctctggaatgggacatggtgggcaagaacctgtttgccatggccgtggaaggagtggtc
ttcttcatcatcaccgtccttttccagtaccgcttctgcctcaagcccattaacctgcac
accaagctccctccggtgggtgaggaggacgaggacgtggccagagagaggcagaggatc
gtcaacggactgggacacggagacatcctggagctccgacagctcaccaaagtctacaag
aggaagcaaaagccagttgtagaccgcctgtgtgtgggcatccctcctggagagtgcttt
ggcctcctgggtgtgaacggagctggaaagaccaccaccttcaaaatgctgacaggagac
tccatggtcaccagtggagaagctttcctggctggaaaaagtatactgcgggagatagac
gaagtgcaccagaacatgggctactgtccccagtttgatgccatcaacgaactgctgaca
ggcagagagcacctggagttctacgccgtcctgcgtggagtgcccgagaaggaagtgtgc
gaggttgctgaatggggcatccgtaagctgggcctagtaaagtatgtggacaaggcagca
ggaagctacagcggaggaaacatgaggaaactctccacggccatggccctaataggagga
ccacccgtcgtgttcctggacgagcccactactgggatggaccccaaagcgcgcagggct
ttatggaactgcattcacagcgtcatcaaggagggacgctccgtggtgctcacctcgcat
agtatggaggaatgtgaggccctgtgcaccagaatggccatcatggtcaacggcagattc
cgttgcttggggagcgttcagcacctaaagaacaggttcggagacgggtacaccatcatc
ctgcgtgtggcgggggcggaccctgacctgccgccggtgatgaagttcattgagagcgag
ctgccgggcagcaccctgaaggagaagcacaggaacatgctgcagtaccagctgccctcc
tctctcacctccctggcacacatcttcagcatcctggccaagaacaaggacctgcttcgg
atagaagactactctgtgtcgcagaccacactggaccaggtgtttgtgaactttgccaag
gaccagagtgacgattaccactcaaaagacaattcagttaagcgcaaagaggcggtggtg
gacattaccccgctcagctcgcggcaggctgaagataagctagctgaggagaggctaaag
gagagcttggtgtga
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integrated database retrieval system
