Salmo trutta (river trout): 115172103 Help Entry 115172103         CDS       T08542                                  Name (RefSeq) usherin-like   KO K19636   usherin Organism stru  Salmo trutta (river trout) Brite KEGG Orthology (KO) [BR:stru00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:stru03037]     115172103 Cilium and associated proteins [BR:stru03037]  Primary cilia and associated proteins   USH complex and associated proteins    115172103 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  fn3 Ig_DSCAM-DSCAML_C Pur_ac_phosph_N Laminin_G_2 Laminin_G_1 Galaxin_repeat ChitinaseA_N Interfer-bind Laminin_G_3 Motif Other DBs NCBI-GeneID:  115172103 NCBI-ProteinID:  XP_029585147 LinkDB All DBs Position 33:complement(28325103..28583403) Genome browser AA seq 2929 aa AA seqDB search MCAVCWGWAVGVGVEGDGGRSYNDGQWHSVMATRKQAVGTIIVDDQYQGNASASSGSSII GENTGVFIGGLPEDFTLLRQDSGDAQLVQQGFSGCLRDVQVKMIDSPSEVWQPLDWSRAT ERVVAYESWEGCPAHTEEGAHFLGQGFLELSPEVFSGGEDFDISFEFRTDQLNALLLFSY NTHTSDYILAELEGGMLSLVLSWRGHMTELSMWAGLSYCDGGWNQLSLVKQGDVISASMN DWSEQLRGAAGGELGVDSPLYLGGVPPELNHGALVSHSHRHGLGGCVRGVTVRSGPVTGS GGVPDVSAVSLSASTRRSVRINLDGCPATDSIFYCRGNDSVLVYMGRETQARDLGVQPFT EYLYRVVASGEGGWTTGPWERGRSRETVPQSVAPPSSLQSGSGFSVQVSWAPPLQVRGVI DRYELRAYDLDQPDSTPVTASYLSTGNHTGLLEGLTPFTRYVITVTACTWAGCTESPRDN SRDGDVSWSITTPEEVPEDVSPPSAVSTPSSLAVSWGPPARPNGLITDYLLYHNGQLLYQ GNNTHLNITGLGVYSPHMFVLSVCTAAGCSNSSQVTLLTSQQPPGDMEPPSLTVLDSRTV YIQWSRPEQVNGVLEFYSVYLSVEGEEPVCVYNSSELFEDHTLRNLTPGTTYNFTVTACT GGGCSFSPPSEAHTEESTPENIPAPYVIPLSPHALNITWTPPDTPNGVISSYGVWMNGVL VQNSTSLWFSVDHLSPWSLHSFRVQACTAQGCALGPLVERRTLEMAPVGPVVLEVDSEGP TSLRAKWSQPAKPSGNITYTLLYTDTGPGHDDDDGDDEGDGVSVYNSSEAGRWVSVGGLQ PYSNYSLMVRACNTMGCVDSLPTAVFMPPTAPDGVMPPGGLDATPASLQLSWLPPGRANA PGPLYYDLQMRATPDGPIRQLLNNVTSTFSHTVEGLSPYTDYLFRVVVSHTHGETASDWT SLRTAEDSPGPVDPPVVSALQSHSVLVSWVPPAQPNGVITHYTLHLTSTLSLSHSTATVP GNTTSYSLYNLLPYQLYSLQVEACTPAGCTLSGESQSFHTPAAPPEGVPVPHLYSDTPTS VLLSWGAPERSNGELEGWVVERSVRGTQQVSTVVRLPPSPPPLSYLDHSSALSPWTSYQY RLVASTQAGSNTSAWANITTRPSRPAGLVPPRVDVLGPDSLQVMWSPPVIANGVIDRYEI RLPDPRVSHDDLSNLIVTVTDLVPYTDYLVTVLACSSGGGLIGGCTESLPTAVTTLPTIP QDLAPLAVVAVSESFLAVSWQPPDRPNGPNLRYELLRRKSRQPLAAQAPADLHRWFNVYA GDKLFHQDKGLSRFTWYQYQLLVYNDVGYSTGQLATGVTLAGVPLHPPSLSVQTIDHTSI HISWTEPSQQDLQGEVELYTLRVESSHLRRTLTFPPGVDSTVIGDLQPNTHYRVSLQVSN GAYNTSNIEVNCTTEDGEPEGVFPPEVVPVNSSTVRVLWSPPLQPNGAVTEYSVYLDETV HATADNTSGSYLLGGLLPFTVYDIKVEVCTVYGCVKSNATQVTTVEDLPADIAPPHIQVL SPRSVRVEWSSPGQPCGIMLGYEVWRKMLRPCGGAEWGSSVTQGGERSEVRCSYLQCSAS QGVCGASCYQPQRQVCCDGVVYTSKPLHLCCEGRYLPSPNSSHTLCCGGKLLPPLPDHQC CGRYYIPVATGEVCCPDPGQGRVSVGVGDACCGRVPYSPSGGQLCCGGLLHDGYRSQCCG STVIEDTLVCCGDAERGIPHTPLTGLSCCGEDYLNSSTSLCCVGHDGFPRMHPAGNGTVH FQCCGSEVINQEEECCNGVGYNPHRHVCADRVSSGLVKEAQCSPSTLCSVSAASTAYCGS CSFNPSLYICTWVLATHTLHTTHTPDTTTLNSPRTTHTLMTSHTPLTTHTPLEQSDPGLC SSQEDLIYSGVANRYSYTDSDLEPYTTYEYRVSAWNSYGRGYSNVTVVTTNEDTPWGVAP PHWSRLGDRDDVIQLHWQAPAKPNGDISHYVVLRDGQERYRGDEMSFTDVGGIRPFQEYE YWLRACNSAGCTDSSQVLAVTVQGVPEEVGSPIVTALGPGSLRLSWAPPSKSNGIIRLYH INMTSTGTIHTHTPSDGPLNYTVTGLQPHSDYSFVLVACTAVGCGASQPSTGHTLQDAPT GVWSSPRHVVVNSTAVELYWDQPLQPNGHVASYRLLRDGVTVFAGDSQDNNYTDTQLQPN TRYVFVLEASTSGGSGLSNRYVVQTPVSSPLGVPPPHNVTVVGPRSLFVSWKPPGVFNTS LPLYYNILLNPGSARSVMRTVGQDQYLSVSGLDPYTQYHIRVQACQADGCGLGEGVYVRT SEAPPEDMDPPTVTAAGATVIQVCWNPPHKPNGLITSYFIHRRPMGTQEELLVFIWSNGP LEFIDASDALQPFRQYQYSVLAHNSRGSARSQWASAVTMEAGPEDISPPIVTPTSAYSVQ LNWTQPGQPNGRISQYRLVYRKQHTDPTLNSSTITALTVPFSSEKVWVVNSVGRSGSQWA NGRTGPAPPEGVGPPTFLRILATSAVVDIRPPTRPNGIVSLYRVFSQGPNATHTLLSEGT SRQQTLHGLSPYTQYWVGVEACTCYQCCSQGPMSELRTQASPPAQQPSPRPVALTSRSVQ VEWDEPLAPNGLIESCEVHVRSSCPQPPQPVPPLCVEGPIETRFFGRGRNYNVTGLQPYS SYQLRATCFNNMGSTASNWTTVTTLTEAPQYISPFEVYSNLTLVWLDWSASFSLNGLLRD YSLTDNSLRVYIGFHSYLYIPRISEKSPVEPTPGGKQGVGTQGPPVYSEMWFILLLVFLG LLVLAVLLGLLLRRALRKEPFIRERPPLVPLQKRSQAGGDAYMRPYSDMCSKHHASTLLL TDLSTVAYVGYFYCIGVWLMIVLMKVGISLHFIHLYFLLPITPPGPDGQ NT seq 8790 nt NT seq  +upstreamnt  +downstreamnt atgtgtgctgtctgctggggctgggcagtgggagtgggagtggagggtgacggggggagg agctacaacgatggccagtggcacagcgtcatggcaaccaggaaacaggccgtgggaacg atcattgtggatgatcaataccaaggtaatgcatctgcttccagcggcagtagcattatt ggggaaaacacaggggtgttcatcggggggctaccagaggacttcactctactcagacaa gactcaggcgatgctcagctggtacaacaggggttctctggttgccttagagacgtgcag gtgaagatgattgacagcccctctgaagtgtggcagcctcttgattggtccagagccaca gagagggttgtggcctatgagagctgggaaggatgccccgcccacacagaggagggggcc cacttcttgggacaagggttcctagagctgagtccagaggtgttcagtggaggagaagac tttgacatcagctttgagttcaggacggaccaactcaacgctctgctgctgttttcctac aacacacacacctccgattatatactggctgagttggaaggaggaatgctgtcattggtt ctatcctggcgtggtcacatgaccgagctgagcatgtgggcggggcttagctactgcgac ggcggctggaaccaactctcattggtcaaacagggagacgtcatctcagcctccatgaat gattggtcagaacagctgaggggggcggcagggggagagttgggggtggactcacccctc tacctgggaggagtgcctcctgaactaaaccatggagctctggttagccacagtcacaga catggtctgggagggtgtgtgaggggtgtaacagttcggagtggtcccgtaactggttcc ggtggtgtaccggatgtttctgccgttagtctgtctgcttccacacgccgctctgttagg atcaatctggacggctgcccggcaaccgacagcatcttctattgccgtggcaacgactct gtactggtgtacatgggccgagagacacaggccagagacctgggagtacaaccttttaca gagtacctgtacagggtggtggcgtcgggagagggaggatggacaacaggaccctgggaa cgtggccgcagcagggaaacagtcccccagagtgttgcccctccctctagtctccagagt gggagtggcttcagtgtccaggtgagctgggccccgcccctccaggtgagaggagtgatt gacaggtacgaactgagggcctacgacctggatcagcctgactcaacacctgttactgcc tcctacctgtccactggtaaccacacaggcctgttggagggtctgactccatttacacgc tacgttatcacggttacagcgtgcacctgggctggctgtaccgagagtccccgtgacaac agtagagatggagacgtgagttggagcatcaccactccagaagaggttccagaggatgtg tcccctcccagtgctgtgtcaaccccctcctctctggctgtgtcctggggtccccctgcc agacccaatggtctcatcactgactacctgttataccacaatggacaactactctaccaa gggaacaacacacacctcaatatcactggtttaggtgtgtattctccccatatgttcgtg ctgagtgtgtgtacggcggcgggctgctctaacagctcccaggtcaccctgctcacctcc cagcagccacctggagacatggagcctcccagcctcaccgtgctagactcccgcaccgtc tacatacagtggtctcgtcctgagcaggtgaatggggtgttagagttctacagtgtgtac ctgtcagtagaaggggaggagccagtgtgtgtgtataacagctcagaactgtttgaagac cacaccctccgtaacctgacaccaggcaccacctacaacttcactgtcactgcgtgtacg gggggaggctgttccttcagcccccctagtgaggctcacacagaggagagcacccctgaa aacatccctgccccctacgtcattcctctctccccccatgccctcaacattacctggaca cccccagacacacccaacggagtgatcagcagctatggagtgtggatgaacggtgtgctg gtccagaactctacctccctatggttctctgttgaccacctgtctccctggagtctacac agctttagagtacaggcctgcaccgcacagggctgtgccctgggaccactggtggagagg cgtacgttggagatggccccagtaggtcccgtggtgctggaggttgatagtgaaggaccg acctctctcagggccaagtggagccagccagccaaacctagtgggaacatcacctataca ctactgtacacagacacaggtccaggtcatgatgatgatgatggtgatgatgaaggtgat ggtgttagtgtgtataatagtagtgaagcagggaggtgggtgtctgtcggaggtctccag ccctactctaactacagcctgatggtccgggcctgcaacactatggggtgtgtggacagt ctacctactgctgtcttcatgccccctactgctccagatggtgtaatgcccccaggtggg ttagatgccacccctgccagtctgcagttgtcctggctccctccgggccgtgccaacgct cctggacccctatactacgacctacagatgagggctacgccagacggccctatacgacaa ctgttgaacaatgtgacgagcacattcagccacacagtggaaggtctgtctccatacaca gactacctgttcagagtggtggtgtcacacacacacggagagaccgccagtgactggacc agcctacgtaccgcagaggacagtccaggtcccgtggacccccctgtggtgtcagccctc cagtcacatagtgtgttagtctcctgggtccccccagcccagcccaacggggtgatcacc cactacactctccacctcacctccaccctgtccctgtcacacagcactgctacagtacct ggcaacactaccagttacagcctctataacctcctgccctaccaactctacagcctgcag gtggaggcctgtaccccggcagggtgtactctctctggggagtcccagtccttccatacc cccgctgccccaccggagggggtcccggtcccccacctctactctgacacccccacctca gtactgctgtcctggggagccccggagaggagcaacggagaactggagggatgggtggtg gagaggagtgtcagaggcacccagcaggtatctacagtggtcagacttcccccgtcccct cctcccctctcctatctggatcactcctcagccctcagcccctggacctcctaccagtac cgcctagtggccagcacacaggctggatctaacactagtgcctgggctaacatcaccacc agaccctctcgccctgccggtctagtcccaccacgggtagatgtgctgggaccggactca ctgcaggtcatgtggtcccctcctgtcatcgctaacggagtgatcgaccgctatgagatc cgccttcccgacccgcgcgtatcccacgacgacctgtccaacctcatcgtcacggtaaca gacctggtgccctacactgactacctggtcaccgtcctggcctgctcctccgggggtggc cttattgggggttgcacagagagcctgcccactgccgtgactacactacccacaatcccc caggacctggcaccactggcagtggtggccgtcagtgagtccttcctggccgtatcctgg caacctcccgacaggcccaacggacctaacctcagatacgagctgctcagacgtaaaagc cgtcagccgctggccgcgcaggccccggcagatctccatcgctggttcaatgtttacgcc ggagacaaattgtttcaccaagataaaggccttagcaggttcacatggtaccagtaccag ttactggtctataatgacgtgggctactctacaggacagctggctacgggtgttaccctg gcaggagtacccctccacccgccctctctgtctgtccagaccatcgaccatacatccata cacatcagctggacagaaccctctcaacaggatctccagggtgaggtggaactctacaca ctcagggtcgaatcctctcacctcagacgaactctgaccttcccacccggggttgattcc acggtgataggtgacctgcagcccaacacgcactacagggtttccctgcaggtgtccaat ggggcttacaacacttctaatatcgaggtcaactgtactactgaagatggagagccagag ggagtgtttcctccagaggtggttccagtcaacagcagtacagtgcgtgtgctgtggtct ccccctttacagcctaacggagctgtgactgaatactctgtctatctagacgagactgta catgctactgctgataacacatcaggatcatacttactgggaggactgctgcccttcacc gtctatgacataaaggtggaggtgtgtactgtgtatgggtgtgtaaagagtaacgctact caggtgactacagtggaggatctacctgccgacatagcacctccacacatacaggtgctc agccccagatcagtgagggtggagtggtcttctccaggccagccctgtggtatcatgcta ggctacgaggtgtggaggaagatgctgagaccctgtgggggggccgagtgggggtcaagt gtgacccaggggggtgagaggtcagaggtcagatgctcctacctgcagtgctccgcctct caaggggtgtgtggggcgtcctgctaccaacctcagagacaggtgtgttgtgatggtgtg gtttacaccagtaaacctctacacctgtgctgtgaggggcgttacctgccctcaccaaac tcctcccacactctgtgctgcggtgggaagctcctcccacctctcccggatcaccaatgc tgtggaagatactacattcctgtggcgaccggtgaggtgtgctgtcctgacccgggacag gggcgtgtgtcggtgggggtgggtgacgcttgctgtgggcgggtgccttattccccgtca ggggggcagctgtgctgtggagggctgctccatgacggctacaggtcccagtgctgcggc agtacagtcatagaggataccctggtctgctgtggagatgcagagagagggataccacac acacctttaacaggtctgtcttgctgtggggaggactatttgaactcctccacatcgctc tgctgtgttggccatgatggttttcctagaatgcatcctgctggtaacggaacggttcat ttccagtgctgcgggtcagaggtcatcaaccaggaagaggagtgctgtaacggagtgggc tacaacccccacagacatgtgtgtgctgacagagtgtcatctggactagtgaaggaggcc cagtgttctcccagtactctgtgttcagtgtctgctgcctccacagcctactgtgggtcc tgttccttcaacccgtctctctacatctgtacctgggtcctcgctacacacacactccac accacacacacacctgacaccacaacactaaactctccgcgaactacacacacactcatg acctcacacacccccctgaccacacacactcctttggaacagtctgatccaggcctctgc tcctcccaagaagatttgatctacagtggagtggccaatagatacagctacacagactca gacttggagccttataccacctatgagtacagagtatcggcctggaacagttatgggcgt ggctacagcaacgtcactgtggtgacaaccaatgaggacacgccctggggagtggccccg ccccactggagtcgcctaggcgaccgtgatgacgtcatacaactacattggcaggctcct gccaagcccaatggtgacatcagccactacgtggtgctgcgtgacggacaggagcgttac cgaggagacgagatgagctttacagatgtgggtgggatccgtccgttccaggagtacgag tactggctccgggcctgtaacagcgccggctgcaccgacagctcacaggtcctggctgta actgtgcagggggtaccagaggaagtgggttctcccatagttacagctctgggtcctggc tctctaaggctcagctgggccccaccctctaaatccaatggcatcattcgactctaccac atcaacatgactagcaccgggacaatacacactcacacaccctcggatggaccgctcaac tacactgttacaggtctgcagcctcactctgactacagctttgtgttggtggcctgtaca gcggtgggctgtggagctagtcagccatctacaggacacactctgcaagacgctcccaca ggagtgtggtccagccctagacatgtggtggtaaactctacagcagtagagctgtactgg gaccagcccttacagcctaacggacatgtggccagctaccgtctactccgagacggtgtg actgtgtttgctggagacagccaggataacaactacacagacacacaactgcagcccaac accaggtatgtgtttgtgttggaggccagtacctcgggcggtagtggtttgagtaacaga tacgtcgtccagacaccagtctcctcccctctgggagtcccgccccctcataacgtcact gtggttggcccccgctctctcttcgtctcctggaaacccccaggtgtgttcaacaccagt cttcctctatattacaacatcctgttgaatccaggaagtgccaggtctgtgatgcgtacg gtgggacaggaccagtacctcagtgtgtctggattagacccatacacccagtaccacatc agagtccaggcctgccaagccgatgggtgtgggttgggtgagggggtgtatgtgcgtacc tctgaggcccctccagaggacatggacccccccacagtgacagcagcaggagccacagtc atccaggtctgctggaaccccccccacaagcccaatggactcatcacctcatacttcata cacaggcgaccaatggggacgcaggaggagctgttggtgtttatctggtccaatgggccg ctagagttcatcgacgccagcgacgccctccagcccttcagacaataccagtacagtgta cttgcccacaactcccggggctctgctcgcagccaatgggcttcagctgtcaccatggag gcgggtccagaggacatttcgcctcctatcgtcacaccgacgagtgcgtactcagtacag ttgaactggacacagcctggacaacccaatggaaggatttcacagtatcgcctggtgtac agaaaacagcacacagaccccacactcaacagctctactattactgcgttgacagtaccg ttctccagcgagaaggtttgggtggtgaattctgttggtcgttcaggaagccaatgggcc aatgggagaacaggtcccgcccctcctgagggtgttggcccaccaaccttcctgcgtatc ttagcaacctcggctgttgttgacatccgcccccccacaaggcccaatggcatcgtcagc ctctacagggtgttctcacagggccccaacgctacacacacactgctgtcagaggggaca tctcgtcagcagaccctccatggtctgagtccatacactcagtactgggtaggagtagag gcctgtacctgctaccagtgctgcagccagggccccatgagtgagctgcgcacccaggcc tcccccccagcacagcagccatcccctcgcccagtggctctgacatcacgctcagtacag gtggagtgggacgaaccgctcgcccccaacggactcatagagagttgtgaggtgcatgtt cgttcctcctgcccccagcctccccagccagtcccaccgctctgtgtggagggaccaata gaaacgcggttcttcgggaggggcaggaactacaacgtaacaggtctgcagccctactcc agctaccagctcagagctacctgttttaacaacatgggtagtaccgcctccaactggacg actgttactacactcactgaggctcctcagtatatctctccatttgaggtgtacagtaac ctgactctggtgtggctggactggagtgcctctttctctctgaacggtcttctgagagac tactctctgacagacaacagcctgagagtctacattggcttccacagctacctctatata ccccgcatctcagagaagagtccggtggagcccaccccaggagggaagcagggtgtgggg acccagggacctccagtctactctgagatgtggttcatcctgctgctagtctttctgggt ctcctggtcctggctgtgctgctgggcctgctgctgaggagggccctgaggaaagaaccc ttcattagagaacgcccccctctcgtccccctgcagaagaggagccaggcgggaggagac gcttacatgaggccgtattctgacatgtgttctaaacatcacgccagtactctgctcctc actgacctctccactgttgcatatgtgggatacttctattgtattggtgtgtggctgatg attgtgttgatgaaggtcggtatatcattgcatttcatccacctctacttcctgttaccc atcacccccccagggcctgacggacagtaa

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