Salmo trutta (river trout): 115172394
Help
Entry
115172394 CDS
T08542
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115172394
03015 mRNA surveillance pathway
115172394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115172394
03041 Spliceosome [BR:
stru03041
]
115172394
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115172394
Spliceosome [BR:
stru03041
]
Complex C
Other components
EJC/TREX
115172394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Aconitase_C
Motif
Other DBs
NCBI-GeneID:
115172394
NCBI-ProteinID:
XP_029585665
Ensembl:
ENSSTUG00000025435
UniProt:
A0A674AI07
LinkDB
All DBs
Position
33:complement(12226247..12232035)
Genome browser
AA seq
696 aa
AA seq
DB search
MAVAVGSLQAQLEKAKESLKNVDDNIRKLTGRDPNELRPGQVRRPTIPGVGGGRGRGINL
LRRGLSDISGGPGGPPVKQRDIEGALLRLAGDQRGRRDSRHDSDAEDDDDVKKPVLQSSV
VATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESNVATDRQKKRIEIEQK
LEVQAEQERKKVEGERRELFEERRAKQTELRLLEQKVELAQLQEEWNVHNTKIVKYIRTK
TKPPIFFLPGRMCSATQKLLDESQKKMNIMFEERREAFAEHLNKMEARPRRQSQRDTALG
KDLKKEDREEGKPTGQVVKVTGNRFDVEMEEEDEATIEEEKKEERDEGVKRKEDRKKKPV
EKVGEQESKKGGTKADEMEEAEEDSQDTRIVEFRDVGEQMEATAVVREAEGQARDGDQKM
EDSPVEVGNEKGVEEQQPVKVEKEPLHGQDLTAVSDDQEKSIEMQPSEDEEPRTEVATPL
LSECNPSVEVSDVVTSMAPEVQIPLLEAGTEPEPLTTEQSQEADQVAIKQTTNAQPAQDD
AAAPKELAPPSKEASRGRKKSKDKKGGGGGRSSSSSSSSSSGSSSSGSSGSSSSGSSSRS
SSSSGSSSSSSSRSRSRGRKDKKRRRRPSERDRERKKAVVERSHKSSKGSGRESKGSKDK
ISKSDRKRTTSEGSRSGKRSSRGDRDRKSDRKEKRR
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagtgggatctttgcaagcccagcttgagaaagcgaaagagagtttgaaa
aatgtagacgataatattcgtaaattaactggtcgggatcctaatgaattgagaccgggc
caagttagacggccaaccatcccaggtgttggaggaggtagggggcgaggaatcaacttg
ttgagacgtggactctccgacatcagcggtggaccaggaggacccccagtgaaacagagg
gatattgaaggggccctcctgaggctggccggtgaccagagagggaggagagattcacgc
catgacagcgacgctgaagatgatgacgatgtcaaaaagccagtgttgcagtcatcagta
gtagctacctccaaggagcgtacacgtcgagacctgatccaggatcagaccatggatgag
aggggaaaacaaaggaatcgacgcatgtttggcctgttgatgggaacattacagaaattc
aagcaggaatctaatgtggcaacggataggcaaaagaaacgcattgagattgaacaaaaa
ttggaagttcaagctgaacaagagcgcaaaaaagtagagggcgaaagacgagagctcttt
gaggagagacgtgccaagcagacagagctgagactgttggaacagaaagtggagcttgct
cagttgcaagaggagtggaatgtgcacaacacaaaaattgtcaagtacatccgcacaaag
accaagccacccatcttctttctgcctgggaggatgtgctcagccactcagaagctctta
gatgagtctcagaaaaaaatgaatattatgtttgaggagagacgcgaggcatttgctgag
catctgaataagatggaggctcggcctcggcgccagtctcagagggacaccgctcttggt
aaggacctgaagaaagaagatcgagaggagggtaagcccacgggtcaggtagtcaaagtg
acaggtaaccggtttgatgtggagatggaggaggaagatgaggcaacaatagaggaggaa
aagaaggaagagagggatgagggtgtaaagcgtaaggaggacagaaagaaaaagccagta
gagaaagtcggggagcaggagtctaagaagggggggactaaagcagatgagatggaggag
gctgaggaagacagtcaagacactagaatagtggagttcagagatgtgggggagcagatg
gaggctactgcagtagtgagggaggctgaagggcaggccagggatggggatcagaagatg
gaggatagtccagtggaggtaggtaatgagaaaggcgtagaagagcagcaaccggttaag
gtagaaaaggagccccttcacggtcaggacctcacagctgtgtcagacgaccaggagaag
agcattgaaatgcaaccaagcgaagatgaagagccacgtacagaagtggccacacccctg
ctctcagagtgcaaccctagtgtggaagtctctgatgtagtaacatctatggctcctgag
gttcagatccccctactggaggctggaacggagccagagccactcacaaccgagcagagc
caagaggctgatcaagttgccataaagcagaccactaatgcccagccggcccaggatgat
gctgcggctcccaaggagctggcgcccccgagcaaggaagccagcaggggacgtaaaaag
tcaaaggacaagaagggaggcggtggtgggagaagcagcagtagctcatctagcagctcc
tccggctcctcgtccagtgggagctccggctcctcctctagtggctcctccagcaggagc
agctcctccagtggcagctcctccagctcttctagcaggagccgcagccgagggaggaag
gacaagaagcgtaggaggaggccatccgagagggacagggagaggaagaaggcagtagtt
gagaggagccacaagtcgtccaagggcagtggtcgtgaatccaaaggttccaaagataag
atctccaagtctgacaggaagaggaccacctctgaaggcagccggtcagggaagaggtcc
tctcgcggtgacagggatcgcaagtcagataggaaggaaaagaggcgttaa
DBGET
integrated database retrieval system
