Salmo trutta (river trout): 115172716
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Entry
115172716 CDS
T08542
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115172716
03015 mRNA surveillance pathway
115172716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115172716
03041 Spliceosome [BR:
stru03041
]
115172716
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115172716
Spliceosome [BR:
stru03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
115172716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
115172716
NCBI-ProteinID:
XP_029586269
Ensembl:
ENSSTUG00000021678
LinkDB
All DBs
Position
33:complement(24323537..24338892)
Genome browser
AA seq
879 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDEKKEKENKDNRERESPRRRKSRSQSPRRRSPV
KRERKRSHSRSPRRKPSPSSSPPPTAPAVTLVSVTLPQGTEEPQPEPDTSESAVPEPVVQ
EASSTSDLVKPHTEVVVPDSVMKVKEPSPGKASKKEERPKPREKDGRRDRPRHRSRSHSR
RRPKSRSRSYSPRRRPSPRRRMSPRRRSPPRRGPPGPRHRRSRSPVRRRRSRSPSSSRSN
SSTPHLPQKAMKRTSTTPPRKQPRGHAADPSLSPSRRRAPNGSPSGKTRRSASPRARKGR
YSASPSRSAGSKKKPGSRNDSLSPVPKPRHSEASESEGATADPVQQRRQYRRQNRETSSD
TGSSSSSEDEGSKRPGGGPAARNGNVRRRRSRSPSSPRRRHRDGSPRKRRSLSPGGRRSP
PRRRRSPSPPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPTPLGPQKRRLSGSPPPKRLS
PMPKRRPSRSPKRRSPLPQKRRTPPLPTSPPRLRRSPMLPSNRPGRDTRSPPAVHSNRLS
PSPANRGRAMRGSASPQGRFDSSGTSPPGQRRQASPSHSNRAIRRVSRTPEPRKNQRASQ
SPQPMRRASSRSPSGSPKPGALKRPAPASGFPSSGCSASGSPSAPLAKMASSGSGSPSPN
KNSDTEAGGKKNKKHKKEKKHKKEKKHKKHKKHKKEKSGVPVAAGDGQENLGMEEDVDSD
LKKESDSEVEERLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggcacaagtgcagaacaggacaatcgcttcagcaacaag
cagaagaaacttctaaagcaactgaaatttgcagaatgtctggaaaagaaggtggatatg
accaaggtgaacctagaggtcatcaaaccttggatcactcagcgagtgacggagatcctg
gggtttgaggatgatgtcgtcatagaattcatatttaaccagctagaagaaaagcacccg
gacagtaagatgatgcagatcaacctgacgggcttcctgaatgggaagaatgccagagag
tttatgagggacctgtggcctctgctgctcagtgcccaggacaacattgccggtatcccc
tccgccttcctggaacagaagaaagaggagatcaaacagagacagattgagcaggagaag
cttgcctctctgaagaagattgatgagaagaaggagaaggaaaacaaagataacagagaa
agggagagccccagaaggaggaagtcaaggtctcagtctccacgacgacggtctccagtg
aagagggagagaaagcggagtcactcccgctccccgaggcgtaagcccagtcccagcagc
tcccctccaccaacagccccagccgtcaccctggtcagtgttaccttgccccagggcact
gaggagccccagccagagcctgacacctctgagagcgccgtacctgagccagtcgttcag
gaggcctcttccaccagtgatttggtgaagccgcacactgaggttgtggtacctgactct
gtgatgaaggtcaaagaaccctccccaggtaaggcttctaaaaaggaggagaggcccaag
cctagggagaaggacggcaggagggacaggccccgccatcgctctcgctcccattctcgc
agacgacctaaatcgcgctccagatcttactccccacgccggaggccgagccccaggaga
cggatgtcccctcgtcgtaggagcccccctagacgtggccccccaggtcccagacacagg
cgcagtcgctcccctgtccgcaggcggcgctctcgctccccatcatcctctaggagcaac
tcctccacgcctcacttacctcagaaggccatgaagagaacgtcaaccacgcctcccagg
aaacagccccgcggccatgcagctgatccctccctcagcccctccaggagaagagccccc
aatggtagcccctctgggaagacccgacgctctgcctcccctcgggctagaaagggccgg
tactcagcctccccgtccagatcagctggttcaaagaagaaaccaggatcaaggaatgat
tcactgtctcctgttccaaaacccaggcattctgaggcatcggaatcagaaggggctacc
gcagatcctgtgcagcagcgacgtcagtatcgcaggcagaatcgggagacgtcttcagat
actggatcatcctcctcatcagaggacgaggggtccaagaggccgggcggggggccagcg
gcgaggaacgggaatgtcaggaggaggcgcagtcgctccccctcctcccccaggagacga
cacagggacggctcccccagaaaaagacgctccctctctcctggaggacgcagatctccc
ccacgccgtcgcagatctccctctcctcctccgagacgcaggtctccctctccacctcct
cgcagacgctccccctcccccagacggtactctccccccatccagcggcgctacagccct
actcccctgggcccacagaagagaaggctatcggggtctccccctcccaaacgcctttcc
ccgatgcccaagcgccgtccctccaggtccccgaagcgcaggagtccccttccccaaaag
agacgcacacctcccctccccacctctcccccccgactcaggaggagccccatgctccca
tccaaccggccaggccgggacactcgctccccccctgctgttcacagtaaccgcctctcc
ccctcccctgccaaccgtggtcgggccatgcgtgggtccgctagtcctcaggggcgcttt
gactcctcgggcacctctccacctggccagaggcgccaggcgtccccctcacacagcaac
agggcaatccgcagggtgtcccggacaccagagccccgcaagaaccagagagcctctcag
agcccccagcctatgaggagagcgtcatcaaggtcaccgtctggttctcctaaaccagga
gccttgaagcggccggccccagcctcaggcttcccctcatcgggctgctcagccagtggc
tcgccatcagcccctctggccaaaatggccagcagcggctctggcagcccttctccaaac
aagaattcagacactgaggctggaggaaagaaaaacaagaaacataagaaggagaagaaa
cataagaaggagaagaaacacaagaagcacaagaaacacaagaaggagaagagtggagtg
ccggtggctgctggggatggccaggagaacctggggatggaagaggatgtagactccgac
cttaaaaaggaatcagacagtgaagtagaagagcgtctggacgacctggagaagcacctg
cgagagaaggcactgcgttccatgaggaaagctggaaagctgtccccgccactgtcttga
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