Salmo trutta (river trout): 115172751 Help Entry 115172751         CDS       T08542                                  Name (RefSeq) protein SCAF8-like isoform X1   KO K13191   RNA-binding protein 16 Organism stru  Salmo trutta (river trout) Brite KEGG Orthology (KO) [BR:stru00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:stru03021]     115172751    03041 Spliceosome [BR:stru03041]     115172751 Transcription machinery [BR:stru03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      115172751 Spliceosome [BR:stru03041]  Other splicing related proteins   Spliceosome associated proteins (SAPs)    RNA binding proteins (RBPs)     115172751 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  CID RRM_1 Transformer DUF3525 Motif Other DBs NCBI-GeneID:  115172751 NCBI-ProteinID:  XP_029586336 LinkDB All DBs Position 33:25556556..25615026 Genome browser AA seq 1464 aa AA seqDB search MEAVKAFNDELYSLNEYKPPISKAKMTNITKSAIKAIKYYKHVVQSVEKFVQKCKPEYKV PGLYVMDSIVRQSRHQFGQDKDVFAPRFSKNIIGTFQHLYRCPSDDKSKIVRVLNLWQKN AVFKSDIIQPLLDMAAGLPPPSVTPVMTSRDAPVNNATPGTPATPATPANIVSSLPDWAS QFSNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL TAAASANPISSFNKKMLGHFDFGNDSERSEDSKKDSQSSQMPMVSDSIFHQLAEQLQQQN LEQLQKQLMEHQQHQQKDGIFGSENTPQQSSSQSQHPEPGNKMDDSIDNQQQDMDLDDGP EIDEEIFEPEDKKSKTIDIQSRTRSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERK RKLSRSYSSERHARELEKERQKKGLPPIRSKFLSVCSTTLWVGQVDKKATPQDLTNLFEE FGQIESINMIPPRGCAYICMVHRQDAFRARQKLSTGSYKVVSKVIKIAWALNKGVKQEYK QLWDMDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNAEWEAAKNAPEPVKEVVSQAVSA EPMAATNTQQTQQKAFIKQVSMMPVQLPVAQAVPAGGLVPPSFPVSMTMPPPGYGPPPTF LRAGFNASQPPPGFMQAAGVPQQAGMGSAPTSLVQPSMSQAQDSMKDSPYGATVPGSFMP SAIPGQGVFNPLQSGVQTQQGANDKTGQSADGMDAAAELVLQGMQNAMSRRMGLLGMHPS ASLTHPLHQQGLPGQRMPGLMPLDLRPTMLQGAGARFPLLMQQGLSQQSILDASLHAQAR ARAASQMDHFNRAEGAFNRGPNAPNENMSKAEDQPSSRADESQQGRDQDYRFPPPQEKQS MGLLRTPPPEHRESMGGGGRGGGVGGGGAGGGGAGGGGMGGGGRPALLQTPVREPARDSV VGRLQALAGFTPQTQSRWGPPRGDFDERDMRGSPAGVSKGFQEERLGSNQGQNFPNRFEN QHRAGAGGVGAGGPGGRGVGGGPAWSRGGANAAAPFADADMPQDLDEHRRPWDRQQRERD DREFDLRKEMNGNRRERDSREKERERERERDRERERDHGRERGNREREQECNREREREKE REKDRERERERDRNKRGVWTPLLPLPQPLLPTPTLTPTLSLTQGKSQALLQLQSRLQPKP GLLTKPGLLQTPTLLTRSTSQAPTKFLQAPSQSPTQAKNEALPGPEPQSSTQTHASPKSE SSPQTQSSPQNQSSPQNLVSPQAQSPSPPQAQALSPPQALSPPSAQSPSQALSPPPAQSP PQAPSPHQEITDTQEEPENPLWANKPEKPQEEPMEEPEPIEEPEPIEEPPSQLVYGTGLR MDTDVVAEPTPERAPTPTLSPTPAPLLTHRSEEPQCLPELLDVQQPPQHASSSSSSSPKD NGLSEPMEEAEKQPVVEQTDTEGT NT seq 4395 nt NT seq  +upstreamnt  +downstreamnt atggaggcagtcaaagcattcaacgacgagctctactctctgaatgagtacaagcctccg atctccaaggccaagatgaccaatattaccaagtctgcaataaaagctataaaatactac aaacatgttgtccagagcgtggagaagttcgttcagaaatgcaagccagagtacaaggtc ccaggcctgtacgtcatggactccatcgtgcggcagtcacggcaccagtttggccaggac aaggatgtgttcgccccgcgcttcagcaaaaacataatcggaaccttccagcacctctac cgctgcccctcagatgacaagagtaagattgtcagagtcctcaacctgtggcagaagaat gccgtcttcaagagtgacatcatccagcccctgctggacatggctgcaggactaccccct cccagtgtcacccctgtcatgaccagcagggatgctccggtcaacaacgctacgcctggt accccagcgaccccggccactccagccaacatcgtgtccagtctgcctgactgggcgtct cagttttccaacacagacactgtagctgctgtggcccagatcctgcagagtccacaggga caacagctccagcagctggtgcagagtctgcagatgcagcagcagaagccccagccgtct ctgctgcaggcgctggatgcaggcctagtggtccagctgcaggccctgacggcccagctc actgctgccgcctcagccaaccccatctcctccttcaacaagaaaatgttgggtcatttt gactttgggaatgattcggaacgctctgaagactccaaaaaggactcgcaatcatcccag atgcccatggtgtctgactccatcttccaccagctggctgagcagctgcagcagcagaac ctagagcagttacagaagcagctcatggagcaccagcagcaccagcagaaggatggaatc tttgggtctgagaacacaccccagcagagcagcagccaatcacagcacccggagccaggc aacaagatggatgactccattgacaaccagcagcaggacatggacctggatgacgggcca gagatagacgaagagatcttcgagccagaggacaagaagtccaagacgattgacatacag tcaagaacacggtccaggtcacgatcgagatctcccaggaagagacggtccagatcacgg tcaggctctcggaaacggaaacatcgcaagcgatcgcggtcacgctccagagaacggaag aggaagttgtcgcggtcctactccagcgagagacacgcccgcgagctagagaaagagcgg cagaagaaaggactgcctccaatccgatccaaatttctcagtgtgtgcagcaccactctg tgggtgggacaggtagacaagaaggccactccgcaggacctcaccaatctgtttgaagag tttggtcagattgagtctatcaatatgatccctccccgtggctgtgcctacatctgtatg gtccacagacaggatgccttccgcgccagacagaaactcagcactggttcatacaaggtc gtctccaaggtcattaagatcgcttgggcgctgaataagggagtgaagcaggagtataag cagttgtgggacatggacctgggggtcacctacatcccctgggagaaggtcaagctggac gacctggacggcttcgctgagggaggcatgatcgaccaggagactgtcaacgccgagtgg gaagcagccaaaaatgcaccagagccagtgaaggaagtggtgagccaggctgttagcgct gaacccatggcagccactaatacccaacagacccaacaaaaggccttcatcaaacaagtc tccatgatgcctgtgcagctccctgtggcccaggctgtccctgctgggggtcttgtgcct ccatccttccctgtttccatgacaatgcccccgccaggctatggccccccgcccaccttc ctcagagcagggttcaacgcctcccagcctcctccaggtttcatgcaggcagcaggtgtt cctcagcaagcaggcatgggctcagctcctacatctctggtgcagccctccatgtcgcag gctcaggacagcatgaaggactccccgtacggagccactgtcccaggaagcttcatgccc tctgccatccctggacaaggggtcttcaacccgcttcaatctggagtccagacgcagcaa ggagccaatgacaagacgggccaatctgctgatggcatggacgctgctgcagagttagta ctgcaaggtatgcaaaatgcaatgagtcgtcgtatgggtcttctggggatgcacccctca gcctccctcacccaccccctacaccagcagggcctgcctggccagaggatgcctgggcta atgccgctggacctccggcctactatgctccagggagccggggcccgcttccccctcctg atgcagcagggactgtcccaacagagcatcctggatgcctccctccatgcacaggcccgc gccagagcggcctctcagatggaccacttcaacagggccgagggggccttcaaccggggt cccaacgccccaaacgaaaacatgtctaaggctgaggaccagccttcctctcgggcagac gagagccagcaggggagggaccaagactaccgcttccccccgccccaggagaagcagagc atgggcctgctgaggacacctcccccggagcacagagagtccatgggtggaggtggacgt ggtgggggagttggtggtgggggtgctggtggtgggggtgctggtggtgggggtatgggc ggaggaggcagacctgccctgctccagaccccagtgagggagccagctagagacagcgtg gtagggcggcttcaggccctcgccggcttcaccccccagacccagagtcgctgggggcca cctagaggggactttgatgagcgtgacatgcggggctcaccggcgggggtctccaagggc ttccaggaggagcgccttggctccaaccaggggcagaactttcccaaccgctttgagaac cagcaccgcgctggggcaggaggagtaggtgctggtggtcctggtggcaggggtgttgga gggggcccggcgtggagtcgtggtggagctaatgctgcagcaccgttcgctgatgctgac atgccacaggacttggatgagcaccggcgcccttgggacaggcagcaacgggagagggac gacagggaatttgacttaaggaaggagatgaacggcaaccgccgtgagagagatagccgc gagaaagaacgggagagggagagagagcgggaccgggagagagaaagggaccatggccgt gagcgtggcaaccgtgaacgagagcaggaatgcaaccgggagagagagcgtgaaaaggag agggagaaggatcgggagagagaacgtgagcgggaccgtaacaagcgtggagtctggaca cctcttctccctctaccacaacccctacttcctactcctaccctgaccccaacactctcc ctgacccaaggcaaatctcaggccctgctgcaactacagtccaggcttcaacctaaacct ggactcctaactaaaccgggtctgcttcaaactccaaccctcctaactcggtcaacatct caagccccaaccaagttccttcaagccccatcccagtctccaactcaagccaagaatgaa gccctccccgggcctgagccccagtcctctacccagacccatgcttcccccaagtctgag tcctcaccccagacccaatcctctcctcagaaccagtcatcaccccaaaacctggtttcc cctcaggcccaatcgccgtcccctccccaggcccaggccctatccccaccacaggccctg tccccaccatcagcacagtcgccctcccaggccctgtccccaccaccggcacagtcgcca ccccaggccccatcgccacaccaggagatcactgacacccaggaagagccagagaatccc ctttgggccaacaagccagagaaaccccaggaagaacccatggaagagcctgaacccata gaagagcctgaacccatagaggaacctccatctcagttggtctatgggacggggttgagg atggacactgacgtagtggctgagcccacacctgaacgggctcccacccctaccctctcc cccactcctgccccactcctcacacaccgctctgaggaaccccaatgcctgccggagctc ctggatgtgcagcaaccaccacagcatgcctcctcctcctcttcctcctcccctaaggac aatggactgagtgagccgatggaggaagctgagaaacagccagtggtagagcaaactgac actgaggggacataa

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