Salmo trutta (river trout): 115173033
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Entry
115173033 CDS
T08542
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
stru
Salmo trutta (river trout)
Pathway
stru04140
Autophagy - animal
stru04148
Efferocytosis
stru05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115173033
04148 Efferocytosis
115173033
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115173033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115173033
Membrane trafficking [BR:
stru04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
115173033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Motif
Other DBs
NCBI-GeneID:
115173033
NCBI-ProteinID:
XP_029586864
Ensembl:
ENSSTUG00000037445
UniProt:
A0A674CQA9
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Position
33:complement(42351591..42407468)
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AA seq
876 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLFIVSQYKILISLLENNIHVHDLLTFQQITVVSKAKGATLFACDLQLSPTGE
AQLRMCVAVKKKLQLYYWKDREFYELQGDFSAPDIPKSMAWCQNSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVVPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIDME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLAKMKDDVEGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPTDYRKQLHYPNPLPSLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLDNNHCHIEES
EYILKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGMENLG
IVFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAVPYLEHIIHVWE
ETGPEFHNVLIQMYLERVQGLMKQYLNSLPEGVPAVAAGKEEGDLGEFRNKLVCFLEVST
SYEPGRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTHMAKEYCHRHYDKDTD
RNKDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLKAALHVLELHHSKLNTTKAINLLP
ANTQIREIRVFLESVLEEKAQRKRFDQVLKSLLQAEFLRVQEERIFHQQVKCTISEEKTC
RVCKKKMGNSAFARYPNGVVVHYFCCKDRGVCPIEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcttacgaaccggtaccaatcctggagaaactgcctcttcagattgactgt
cttgcggcctgggaggactggcttctagttgggaccaaaccaggccatctgctgctctac
agaatcaaaaaagatgcaggtaccaacaggtttgaggtgactctggagaaatccaacaag
aacttctccaagaagatccagcagctcttcattgtctcacagtacaagatcctcattagt
ctactagagaacaacatccatgttcatgatctgttgaccttccagcagattactgtggtc
tccaaggccaaaggggcaacgctcttcgcctgtgacctgcagctgtcccctacaggagag
gcccagctgaggatgtgtgttgcagtgaagaagaagcttcagctgtattactggaaggac
agggagttctatgagctgcagggggacttttctgctccagacatccctaagtccatggcc
tggtgtcagaactccatctgtgttggcttcaagagagactactacctcatccggatggat
ggtcgtggctccatcaaggagctcttccccacggggaagcagctggagcccctggtggtc
cccctggctgatgggaaggtggcggtgggccaggatgacctcacggtggtgctcaacgag
gagggggtctgcactcagaagtgtgccctcaactggactgacatccccattgatatggaa
caccagcccccatacatcatagctgtcctgcctcgctatgtggagatcaggacctttgaa
cccagactgctggtccagagtgtggagctacagagaccacgattcatcacctcagctggg
cctaatatagtgtatgttgccagcaaccattttgtgtggcgtctggtgcctgtgtccatc
gccagtcagatcagacagttactacaggacaagcagtttgaactggccctgcaactggcc
aagatgaaggatgatgtggaaggagataagagacagcagattcaccacatccagaatctc
tatgccttcaatctgttctgtcagaagaggttcgatgactccatgcaggtgttcgctaag
cttggtacagatcccacccatgtgattggtctgtacccggacctgctccccactgactac
cgtaaacagctgcactaccccaaccctttacccagtctgtctggagcagagctggagaag
gctcacctcgctctcatcgactacctgacacagaaacgcagccacctggtgaagcagctg
aacgactcggacccgtccaccacgtctcccctcatggaaggaactcccaccatcaagagc
aggaagaagcttctgcagatcatcgacaccacgctgctcaaatgctacctgcataccaac
gtggccctggtgtcccctctgttgcgtctggataataaccactgtcacattgaggagagt
gagtacatcctgaagaaggcccacaagtacagcgagctcatcatcctctatgagaagaag
ggtctgcatcagaaagccctgcaggtgttgttggaccagtccaccaaagctaactctccc
ctaaaggggcatgagaggactgtgcagtacctccagagactggggatggagaatctaggc
atcgtctttgagttctctccctgggtgttgaagatctgtcctgaagacggactgaagatt
ttcactgaggacctgacggaggtagagaccctgcccagagacaaggtcctgaacttcctg
aaggagggttttaaggagctggctgtcccctacctagaacacatcatacacgtctgggag
gagacaggaccagagttccataacgtcctcattcagatgtacctggagagggtccagggg
ctcatgaagcagtacctcaactccctgccagagggtgttcctgcagtggctgctgggaag
gaggaaggggacctgggagagttcaggaacaagctagtgtgtttcctggaggtctctacc
agctacgaaccaggccgactcatctctgacttccccttcgatggtcttctggaggagcgg
gccctgctgctgggtcggatgggcaaacatgaacaggcccttttcatctacgtacacgtc
ctgaaggacacacacatggccaaggagtactgtcaccggcattatgacaaagacacagac
agaaacaaagatgtgtacctgtctctgctgcgcatgtatttgtcccctcctgatgtccac
tgccttggaccaatcaaaatggagctgtcagagccacaggccaatctaaaggctgctcta
cacgtgctggagctgcaccacagcaagctgaataccactaaggccatcaacctgctgcca
gccaacactcagatcagagagatccgtgtgttcctagagagtgttctggaggagaaggct
cagaggaaacgctttgaccaggtgctcaagagtctgctgcaggccgagttcctacgggtc
caggaggagcgtatcttccaccaacaggtcaagtgtaccatctcagaagagaagacctgc
agggtctgtaagaagaagatggggaacagcgccttcgccaggtatcccaacggtgttgtc
gttcattacttctgctgtaaggaccgaggcgtgtgtcctattgagcagtga
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