Salmo trutta (river trout): 115173390
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Entry
115173390 CDS
T08542
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115173390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115173390
03036 Chromosome and associated proteins [BR:
stru03036
]
115173390
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115173390
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115173390
mRNA degradation factors
5'-3' decay
Decapping complex
115173390
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115173390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
115173390
NCBI-ProteinID:
XP_029587284
Ensembl:
ENSSTUG00000050251
LinkDB
All DBs
Position
34:5614231..5683206
Genome browser
AA seq
492 aa
AA seq
DB search
MAAARTENLGPVVMGLNKQNGQLRGPPKLASPQSGPLVLGSLSDEATGASQKAGAAQEGT
GIRFGDDWKKSLQLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQE
ESIPIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQAIVMVPTRELALQVSQIS
IQISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMV
MDEADKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLQKPYEINLMEEL
TLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYI
HAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGR
SGRFGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKNLYVAEFHTANLDCEVEE
ELKETGCQQEET
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgccagaacagagaaccttggtcctgtcgtcatgggactgaacaagcagaac
gggcagcttagggggccgcctaaactggcttctccccaatcaggacccctcgtcctgggc
tctctgtcagacgaggccacaggtgcatcccagaaagcgggtgctgcccaggagggaact
gggattaggtttggagatgactggaaaaagagcctacagctccctcccaaagacaccagg
gtcagaacctctgatgtaacgtccactaaggggaatgagtttgaggactactgtctgaaa
cgggagctcctgatgggcatctttgagatgggctgggagaagccctcccctatccaggag
gagagcattcccatagccctgtcaggacgagacatcctggcccgagccaagaatggaaca
gggaagagtggggcctacctcatccccatgctggagagaatagacctgaagaaggactat
atacaggccattgtgatggtgcccactcgtgagctggccctgcaggttagccagatcagt
atccagatcagtaagcacctgggcggcgtgaaggtcatggccaccacaggcggcaccaac
ctgcgagatgacatcatgcgcctggacgagactgtgcatgtggtcatagccacacccggc
aggatcctagacttgataaagaagggcgtggcaaaagtggatagagtccaaatgatggtg
atggatgaggcggacaagctgctgtctcaggactttgtagtgcttatcgaggatatcatc
agcttcctggccaagggccgtcagatcctactctactctgccaccttccccatcagcgtg
cagaagttcatggccaagcacctgcagaagccctatgagatcaacctgatggaggagctg
actctgaagggcatcacccagtactacgcctacgtcactgagagacaaaaagtccactgt
ctcaacacgctcttctcgcggctgcagatcaatcagtccatcatcttctgtaactccacc
cagagagttgagctgctagccaagaagatcacccagctgggctactcctgcttctacatc
cacgccaagatgatgcaggagtacagaaaccgtgtgttccacgacttcagaaatggactc
tgcagaaatcttgtctgcaccgatctgttcaccaggggtattgacatccaagccgtcaat
gttgtcatcaacttcgacttccccaagaacgctgagacatacctgcatcgcatcggaaga
tcagggaggtttggtcacctgggcctggccatcaacctgatcacctctgaggaccgcttc
aacctgaagtccatcgaggaccagctggtcaccgacatcaagcccatccctggcagcatc
gacaagaacctgtacgtggccgagttccataccgccaacctagactgcgaggtggaggag
gagctgaaggagacaggctgccaacaggaggagacctag
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