Salmo trutta (river trout): 115173554
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Entry
115173554 CDS
T08542
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
stru
Salmo trutta (river trout)
Pathway
stru03320
PPAR signaling pathway
stru04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
115173554
03320 PPAR signaling pathway
115173554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115173554
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
stru03310
]
115173554
Transcription factors [BR:
stru03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
115173554
Nuclear receptors [BR:
stru03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
115173554
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
115173554
NCBI-ProteinID:
XP_029587618
Ensembl:
ENSSTUG00000034427
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Position
34:complement(10723924..10744621)
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AA seq
480 aa
AA seq
DB search
MGDSRDSRSPDSSSVSSPPSGQRSPPLTPTAAAMTSLPPVTSAVNSPISSMGSPFSVISS
SLGSPCLPGTPSVGYGPISSPQINMYTRSAEINSTVSMSGLHAVSSSDDVKPPFGLGGHS
PGGPMLSQKRLCAICGDRSSGKHYGVHSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQ
RNRCQYCRYQKCLACGMKREVVQDERQRSVQEERQRNKERESEVESTSAVNEEMPVEKIL
EAEMAVEQKTELHADGSSGDSSVNPNDPVTNICQAADKQLFTLVEWAKRVPHFSELALDD
QVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEV
GAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLES
YCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacagcagagattcccgcagcccagacagctcctctgtgtcctcccctccctcg
ggccagcgctcgccacccctgacccccacagctgccgccatgacttctctgccgcccgtc
acctcggccgtcaacagccccatcagcagcatgggctcgcccttctctgtcatcagctcc
tccctggggtcgccctgtctgcccgggacaccctcggtgggctacggccccatcagcagc
ccccagatcaatatgtataccaggagtgcagagatcaactccacagtttccatgtcgggc
ctgcacgcggtcagcagctcggatgacgtgaagcctccgttcgggctgggaggccacagc
ccagggggccccatgctctcccaaaagcgcctgtgtgccatctgtggtgaccgctcctct
ggtaagcactacggagtgcacagctgcgagggctgcaagggtttcttcaagcgcacggtg
cgcaaggacctgagctacacctgccgggacaacaaggactgcctggtggacaaacgccag
cgcaaccgctgccagtactgtcgctaccagaagtgcctggcctgtggcatgaagagggaa
gtggtccaagatgaacgacagagatccgtacaggaagagcgccagaggaacaaggagcgg
gagagcgaggtggagtcgaccagtgccgtcaacgaggagatgcccgtggaaaagatcctg
gaggccgagatggccgtggaacagaagaccgagctgcatgcagacgggagctccggggac
agctcggtaaatcccaacgacccagtcaccaacatctgccaggctgcagacaagcagctg
tttaccctggtggagtgggccaagagggtcccccacttctctgagctggccctggacgac
caggtcatcctgctacgtgccggttggaacgagctgctgatcgcttccttctctcaccgc
tccatcagtgtgaaggacggcatcctattggccaccggcctacacgtgcacaggaacagc
gcccacagtgccggcgtgggagccatcttcgacagggagagtgcgcacaatgcagaggtt
ggagccatatttgacagagttctcactgagctggtcagtaagatgagagacatgcagatg
gacaagaccgagctcggctgcctccgagccatcatcctcttcaacccagatgctaagggc
ctgtccagcccaagtgaagtggaattgctgagggagaaagtgtacgcatcgctggagtcc
tattgtaaacagagatacccggaccagcagggcaggtttgctaagctcctcctccggctg
ccagcgctgcgctccattggcctgaagtgcctggagcacctgttcttcttcaagctgatt
ggcgacacccctatcgacacgtttctcatggagatgctagaggcgccccaccagctgacc
taa
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